RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0397581 |
| rosa_samantha | Rh3AG206700 Rh3DG233000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 57, 98, 111 |
| AcoI | YGGCCR | 1 cut(s) | 132 |
| AfaI | GTAC | 2 cut(s) | 82, 110 |
| AgsI | TTSAA | 2 cut(s) | 53, 100 |
| Alw26I | GTCTC | 1 cut(s) | 113 |
| AlwI | GGATC | 3 cut(s) | 57, 98, 111 |
| AoxI | GGCC | 1 cut(s) | 132 |
| AseI | ATTAAT | 1 cut(s) | 170 |
| BalI | TGGCCA | 1 cut(s) | 134 |
| BamHI | GGATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 113 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmrI | ACTGGG | 1 cut(s) | 198 |
| BmuI | ACTGGG | 1 cut(s) | 198 |
| Bse1I | ACTGG | 3 cut(s) | 66, 135, 193 |
| Bse3DI | GCAATG | 2 cut(s) | 157, 212 |
| BseMI | GCAATG | 2 cut(s) | 157, 212 |
| BseNI | ACTGG | 3 cut(s) | 66, 135, 193 |
| BshFI | GGCC | 1 cut(s) | 134 |
| BsmAI | GTCTC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 134 |
| Bsp143I | GATC | 2 cut(s) | 62, 103 |
| BspANI | GGCC | 1 cut(s) | 134 |
| BspHI | TCATGA | 1 cut(s) | 115 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspPI | GGATC | 3 cut(s) | 57, 98, 111 |
| BsrDI | GCAATG | 2 cut(s) | 157, 212 |
| BsrI | ACTGG | 3 cut(s) | 66, 135, 193 |
| BssMI | GATC | 2 cut(s) | 62, 103 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 127 |
| BstKTI | GATC | 2 cut(s) | 65, 106 |
| BstMAI | GTCTC | 1 cut(s) | 113 |
| BstMBI | GATC | 2 cut(s) | 62, 103 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 131 |
| BstNSI | RCATGY | 1 cut(s) | 81 |
| BstX2I | RGATCY | 2 cut(s) | 62, 103 |
| BstYI | RGATCY | 2 cut(s) | 62, 103 |
| BsuRI | GGCC | 1 cut(s) | 134 |
| BtsIMutI | CAGTG | 3 cut(s) | 73, 142, 186 |
| Cac8I | GCNNGC | 1 cut(s) | 127 |
| CciI | TCATGA | 1 cut(s) | 115 |
| Csp6I | GTAC | 2 cut(s) | 81, 109 |
| CviAII | CATG | 2 cut(s) | 78, 116 |
| CviJI | RGCY | 2 cut(s) | 134, 197 |
| CviKI_1 | RGCY | 2 cut(s) | 134, 197 |
| CviQI | GTAC | 2 cut(s) | 81, 109 |
| DpnI | GATC | 2 cut(s) | 64, 105 |
| DpnII | GATC | 2 cut(s) | 62, 103 |
| EaeI | YGGCCR | 1 cut(s) | 132 |
| FaeI | CATG | 2 cut(s) | 81, 119 |
| FaiI | YATR | 4 cut(s) | 8, 79, 90, 117 |
| FatI | CATG | 2 cut(s) | 77, 115 |
| HaeIII | GGCC | 1 cut(s) | 134 |
| Hin1II | CATG | 2 cut(s) | 81, 119 |
| HinfI | GANTC | 2 cut(s) | 10, 142 |
| Hpy188I | TCNGA | 1 cut(s) | 62 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| HpyAV | CCTTC | 1 cut(s) | 37 |
| HpyCH4IV | ACGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 1 cut(s) | 77 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 131 |
| HpySE526I | ACGT | 1 cut(s) | 95 |
| Hsp92II | CATG | 2 cut(s) | 81, 119 |
| Kzo9I | GATC | 2 cut(s) | 62, 103 |
| LpnPI | CCDG | 3 cut(s) | 79, 148, 174 |
| MaeII | ACGT | 1 cut(s) | 95 |
| MaeIII | GTNAC | 2 cut(s) | 91, 184 |
| MalI | GATC | 2 cut(s) | 64, 105 |
| MboI | GATC | 2 cut(s) | 62, 103 |
| MboII | GAAGA | 1 cut(s) | 5 |
| MfeI | CAATTG | 1 cut(s) | 39 |
| MflI | RGATCY | 2 cut(s) | 62, 103 |
| MlsI | TGGCCA | 1 cut(s) | 134 |
| MluCI | AATT | 1 cut(s) | 39 |
| MluNI | TGGCCA | 1 cut(s) | 134 |
| MlyI | GAGTC | 1 cut(s) | 151 |
| MnlI | CCTC | 1 cut(s) | 160 |
| Mox20I | TGGCCA | 1 cut(s) | 134 |
| MscI | TGGCCA | 1 cut(s) | 134 |
| MseI | TTAA | 3 cut(s) | 170, 180, 220 |
| MslI | CAYNNNNRTG | 1 cut(s) | 53 |
| Msp20I | TGGCCA | 1 cut(s) | 134 |
| MunI | CAATTG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 131 |
| NdeII | GATC | 2 cut(s) | 62, 103 |
| NlaIII | CATG | 2 cut(s) | 81, 119 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmuCI | GTSAC | 2 cut(s) | 91, 184 |
| NspI | RCATGY | 1 cut(s) | 81 |
| PagI | TCATGA | 1 cut(s) | 115 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PleI | GAGTC | 1 cut(s) | 150 |
| PpsI | GAGTC | 1 cut(s) | 150 |
| PshBI | ATTAAT | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PsuI | RGATCY | 2 cut(s) | 62, 103 |
| RsaI | GTAC | 2 cut(s) | 82, 110 |
| RsaNI | GTAC | 2 cut(s) | 81, 109 |
| RseI | CAYNNNNRTG | 1 cut(s) | 53 |
| SaqAI | TTAA | 3 cut(s) | 170, 180, 220 |
| Sau3AI | GATC | 2 cut(s) | 62, 103 |
| SchI | GAGTC | 1 cut(s) | 151 |
| SetI | ASST | 1 cut(s) | 98 |
| SgeI | CNNG | 9 cut(s) | 78, 90, 112, 128, 138, 142, 147, 153, 201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 53 |
| Sse9I | AATT | 1 cut(s) | 39 |
| TaiI | ACGT | 1 cut(s) | 98 |
| TasI | AATT | 1 cut(s) | 39 |
| TatI | WGTACW | 1 cut(s) | 80 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| Tru1I | TTAA | 3 cut(s) | 170, 180, 220 |
| Tru9I | TTAA | 3 cut(s) | 170, 180, 220 |
| TscAI | CASTG | 3 cut(s) | 73, 142, 193 |
| TseFI | GTSAC | 2 cut(s) | 91, 184 |
| Tsp45I | GTSAC | 2 cut(s) | 91, 184 |
| TspDTI | ATGAA | 1 cut(s) | 5 |
| TspGWI | ACGGA | 1 cut(s) | 96 |
| TspRI | CASTG | 3 cut(s) | 73, 142, 193 |
| VspI | ATTAAT | 1 cut(s) | 170 |
| XceI | RCATGY | 1 cut(s) | 81 |