Rh3DG233000

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0024952
Physical Location & Seq
Forward (+)
22146803 .. 22152590
5788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG233000.1

Sequence Viewer

Length: 336 bp
ATGGTCAGATCCAGTGAATGTGCATGTACTGCCTATGTGACGTTCAAGGATCCGTACTCTCATGAGACTGCTTGCTTGGCCAGTGCGAGTCTTTCCTCAACTCATTGCCCTTTATTAATAAATGTTAATGTCACTGGGGAAGCCAAACTGGAGGGAGATTTACCTGGAGTGATTCCAACACCAAGGAGAGATTGGATCGGGGTTGTGGATGAAGCGTGGGCAGGCCAACAAGTTGGTAGCCCTATGAATCCTAAAATAAGACTCATGGTAAATGTCAGCAAAGTATTTCACCCTCGAACTCCTGATGAACAATTTGTTTACAAAACAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

111

Amino Acids

12.14

Weight (kDa)

5.84

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024952)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0397581
rosa_samantha Rh3AG206700 Rh3DG233000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 3, 44, 57, 203
AcoI YGGCCR 1 cut(s) 78
AfaI GTAC 2 cut(s) 28, 56
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 4 cut(s) 3, 44, 57, 203
AoxI GGCC 2 cut(s) 78, 223
AseI ATTAAT 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 281
BalI TGGCCA 1 cut(s) 80
BamHI GGATCC 1 cut(s) 49
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 170, 186
BsaJI CCNNGG 1 cut(s) 182
Bse1I ACTGG 4 cut(s) 12, 81, 139, 153
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 103
BseNI ACTGG 4 cut(s) 12, 81, 139, 153
BshFI GGCC 2 cut(s) 80, 225
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 80, 225
Bsp143I GATC 3 cut(s) 8, 49, 195
BspANI GGCC 2 cut(s) 80, 225
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 4 cut(s) 3, 44, 57, 203
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 4 cut(s) 12, 81, 139, 153
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 8, 49, 195
BssT1I CCWWGG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 73, 223
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 11, 52, 198
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 8, 49, 195
BstMWI GCNNNNNNNGC 2 cut(s) 29, 77
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 8, 49
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 2 cut(s) 8, 49
BsuRI GGCC 2 cut(s) 80, 225
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 3 cut(s) 19, 88, 132
Cac8I GCNNGC 2 cut(s) 73, 223
CciI TCATGA 1 cut(s) 61
Csp6I GTAC 2 cut(s) 27, 55
CviAII CATG 3 cut(s) 24, 62, 265
CviJI RGCY 4 cut(s) 80, 143, 225, 240
CviKI_1 RGCY 4 cut(s) 80, 143, 225, 240
CviQI GTAC 2 cut(s) 27, 55
DpnI GATC 3 cut(s) 10, 51, 197
DpnII GATC 3 cut(s) 8, 49, 195
EaeI YGGCCR 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 3 cut(s) 27, 65, 268
FaiI YATR 5 cut(s) 25, 36, 63, 245, 266
FatI CATG 3 cut(s) 23, 61, 264
FokI GGATG 1 cut(s) 221
GsuI CTGGAG 2 cut(s) 170, 186
HaeIII GGCC 2 cut(s) 80, 225
Hin1II CATG 3 cut(s) 27, 65, 268
HinfI GANTC 4 cut(s) 88, 172, 247, 261
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 62, 302
Hpy8I GTNNAC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 77
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 3 cut(s) 27, 65, 268
Kzo9I GATC 3 cut(s) 8, 49, 195
LpnPI CCDG 8 cut(s) 25, 94, 120, 134, 150, 177, 207, 315
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 37, 130
MalI GATC 3 cut(s) 10, 51, 197
MboI GATC 3 cut(s) 8, 49, 195
MflI RGATCY 2 cut(s) 8, 49
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 2 cut(s) 97, 255
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 3 cut(s) 106, 145, 303
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 2 cut(s) 116, 126
Msp20I TGGCCA 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 29, 77
NdeII GATC 3 cut(s) 8, 49, 195
NlaIII CATG 3 cut(s) 27, 65, 268
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 37, 130
NspI RCATGY 1 cut(s) 27
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 2 cut(s) 172, 247
PleI GAGTC 2 cut(s) 96, 255
PpsI GAGTC 2 cut(s) 96, 255
PshBI ATTAAT 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 8, 49
RsaI GTAC 2 cut(s) 28, 56
RsaNI GTAC 2 cut(s) 27, 55
SaqAI TTAA 2 cut(s) 116, 126
Sau3AI GATC 3 cut(s) 8, 49, 195
SchI GAGTC 2 cut(s) 97, 255
ScrFI CCNGG 1 cut(s) 165
SetI ASST 2 cut(s) 44, 166
Sse9I AATT 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 182
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 295
TasI AATT 1 cut(s) 311
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 2 cut(s) 172, 247
Tru1I TTAA 2 cut(s) 116, 126
Tru9I TTAA 2 cut(s) 116, 126
TscAI CASTG 3 cut(s) 19, 88, 139
TseFI GTSAC 2 cut(s) 37, 130
Tsp45I GTSAC 2 cut(s) 37, 130
TspDTI ATGAA 3 cut(s) 225, 260, 321
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 19, 88, 139
VspI ATTAAT 1 cut(s) 116
XceI RCATGY 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.