Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0032522

Physical Location & Seq

Genomic Coordinates Reverse (-)

21072089 .. 21099296

Gene Structure 27208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCCAATTCATTGGCGCCAGTTGGTGCAATAGTGAAAGAGCCAACACATCCTGAGCTGATTCTCTATAAATGCCGCATCACACGTCTCAAATCAGCTAAATATGCAAAGAAGTCGAATGGTTTTCATAGCAAGAAGGGAAAGCTAGAAATTACGATGGCATCTATTTTAGTGTTCTTTGCTGTGATCTCTATCGCATATTGGTCCACAAAGATGAAGAGAAAAGATTTCTCTAAAGGGAGAAACTGGAAATGTAATGGAACTTCTCTAGCACATCATCAACAATTAAATCTATACACAATATCTAATTTGAGCTTTATAAGTACTGAAGAAACTGTTTTGCCCACTGTTTCAGGTGGGCAAACCGGAAGTGCAGAGAGCTCAACCACGTCTACAACAAGAACATGGAAGTCATGGCAGCCTAAAGTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

10.09

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032522)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG283000 Rh3AG210100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	392
AciI	CCGC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	83
AjiI	CACGTC	2 cut(s)	86, 390
AluBI	AGCT	5 cut(s)	58, 98, 145, 315, 381
AluI	AGCT	5 cut(s)	58, 98, 145, 315, 381
Alw21I	GWGCWC	2 cut(s)	383, 432
Alw26I	GTCTC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
Bbv12I	GWGCWC	2 cut(s)	383, 432
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	146, 269, 433
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	2 cut(s)	76, 419
BlsI	GCNGC	2 cut(s)	77, 420
BmcAI	AGTACT	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	2 cut(s)	86, 390
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	87, 170
Bpu10I	CCTNAGC	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	20, 251
Bse8I	GATNNNNATC	1 cut(s)	191
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	20, 251
BseXI	GCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	383, 432
BsiSI	CCGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	383, 432
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	20, 251
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	337, 349
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 427
BstV1I	GCAGC	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	13
BtrI	CACGTC	2 cut(s)	86, 390
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	405, 414
CviJI	RGCY	7 cut(s)	43, 58, 98, 145, 315, 381, 421
CviKI_1	RGCY	7 cut(s)	43, 58, 98, 145, 315, 381, 421
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	1 cut(s)	54
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	383
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	408, 417
FaiI	YATR	8 cut(s)	69, 105, 129, 199, 295, 320, 406, 415
FatI	CATG	2 cut(s)	404, 413
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	2 cut(s)	76, 419
FokI	GGATG	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	76, 419
FspBI	CTAG	3 cut(s)	146, 269, 433
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	76, 419
HaeII	RGCGCY	1 cut(s)	20
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	408, 417
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	207, 393
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	207, 393
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	337, 349
HpyCH4IV	ACGT	2 cut(s)	85, 389
HpyCH4V	TGCA	3 cut(s)	29, 107, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 427
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	85, 389
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	408, 417
HspAI	GCGC	1 cut(s)	17
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	33, 66, 232, 339, 379
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	2 cut(s)	87, 170
MaeI	CTAG	3 cut(s)	146, 269, 433
MaeII	ACGT	2 cut(s)	85, 389
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	229, 341
MhlI	GDGCHC	2 cut(s)	383, 432
MluCI	AATT	4 cut(s)	7, 150, 284, 307
Mly113I	GGCGCC	1 cut(s)	17
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	104, 427
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	408, 417
NlaIV	GGNNCC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	77, 420
PluTI	GGCGCC	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	204
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	76, 419
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	204
ScaI	AGTACT	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	383, 432
SetI	ASST	8 cut(s)	60, 88, 100, 147, 317, 358, 383, 392
SfaNI	GCATC	2 cut(s)	87, 170
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	7, 150, 284, 307
SsiI	CCGC	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	16
SspMI	CTAG	3 cut(s)	146, 269, 433
SstI	GAGCTC	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	337, 349
TaiI	ACGT	2 cut(s)	88, 392
TaqI	TCGA	1 cut(s)	116
TasI	AATT	4 cut(s)	7, 150, 284, 307
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	116, 230
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	3 cut(s)	146, 269, 433
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.