Rh3AG335600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0032565
Physical Location & Seq
Reverse (-)
48823530 .. 48830679
7150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG335600.1

Sequence Viewer

Length: 489 bp
ATGATAGAGAAAGATGTTGCCCAGAGCACATTTCCACTACCTCAGCTCGCGTCAGAATCTCGCGTCGCAATAATTCTCACAGCCTTACCCACGGATCTATTCTCACAGCCTCAGCTCACCCACCCACAGATCTATTCTCACAGCCAAGGATCTATTCTCACAGCCTCAGCTCGCGTCGCAATCTCGCATCGCCTACTCCGTCTACTCCTCCTCGATCTTCAATCCGACTCGTCGCAAGCGTACCGGAACAATCTCTACGGCACTACCCAGTCTACCAGTCTCTGCTGGTCCAAAATCGCCGGAGGTGGTGGCTGTGAGAGAGGCGGTCTGGACTCTGAAGGAAGAGACGGGAGAAAATCAATTAGGGACTCAAGAGGCATCTTTAGTTTCGAATTCGTAATCTCAAAATACCTGCTTACCGGCGAGAGGCGAAGATTTCCGGCTAAGGTGCAAGGGAGACGACGAGACCGTCAAGATGTGATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

9.92

Isoelectric Point (pI)

67.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032565)

Species Orthologous Gene IDs
rosa_samantha Rh3AG335600 Rh5DG016500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 420
AccI GTMKAC 2 cut(s) 202, 272
AccII CGCG 3 cut(s) 50, 63, 174
AciI CCGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 102, 157
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 3 cut(s) 46, 115, 170
AluI AGCT 3 cut(s) 46, 115, 170
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 4 cut(s) 284, 339, 451, 459
AlwI GGATC 2 cut(s) 102, 157
AlwNI CAGNNNCTG 1 cut(s) 282
ApoI RAATTY 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 390
AvaII GGWCC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 29
BbvCI CCTCAGC 3 cut(s) 42, 111, 166
BceAI ACGGC 1 cut(s) 274
BcoDI GTCTC 4 cut(s) 284, 339, 451, 459
BfuAI ACCTGC 1 cut(s) 420
BglII AGATCT 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 196, 387
BmuI ACTGGG 1 cut(s) 262
Bpu10I CCTNAGC 4 cut(s) 42, 111, 166, 444
Bpu14I TTCGAA 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 90, 145
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 268, 276
BseDI CCNNGG 2 cut(s) 90, 145
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 3 cut(s) 56, 125, 180
BseNI ACTGG 2 cut(s) 268, 276
BseRI GAGGAG 2 cut(s) 197, 200
Bsh1236I CGCG 3 cut(s) 50, 63, 174
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 244, 300, 420, 440
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 4 cut(s) 284, 339, 451, 459
BsmBI CGTCTC 2 cut(s) 339, 451
BsmFI GGGAC 1 cut(s) 380
Bso31I GGTCTC 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 94, 129, 149, 214
BspACI CCGC 1 cut(s) 324
BspCNI CTCAG 3 cut(s) 55, 124, 179
BspFNI CGCG 3 cut(s) 50, 63, 174
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 2 cut(s) 102, 157
BspT104I TTCGAA 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 268, 276
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 2 cut(s) 90, 145
BssMI GATC 4 cut(s) 94, 129, 149, 214
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 48, 172, 237
BstDEI CTNAG 4 cut(s) 42, 111, 166, 444
BstDSI CCRYGG 1 cut(s) 90
BstFNI CGCG 3 cut(s) 50, 63, 174
BstKTI GATC 4 cut(s) 97, 132, 152, 217
BstMAI GTCTC 4 cut(s) 284, 339, 451, 459
BstMBI GATC 4 cut(s) 94, 129, 149, 214
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstUI CGCG 3 cut(s) 50, 63, 174
BstX2I RGATCY 3 cut(s) 94, 129, 149
BstYI RGATCY 3 cut(s) 94, 129, 149
BtgI CCRYGG 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 48, 172, 237
CaiI CAGNNNCTG 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 288
CseI GACGC 3 cut(s) 39, 52, 163
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 9 cut(s) 46, 83, 109, 115, 144, 164, 170, 312, 443
CviKI_1 RGCY 9 cut(s) 46, 83, 109, 115, 144, 164, 170, 312, 443
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 4 cut(s) 42, 111, 166, 444
DpnI GATC 4 cut(s) 96, 131, 151, 216
DpnII GATC 4 cut(s) 94, 129, 149, 214
DrdI GACNNNNNNGTC 1 cut(s) 468
DseDI GACNNNNNNGTC 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 2 cut(s) 339, 451
FaqI GGGAC 1 cut(s) 380
FblI GTMKAC 2 cut(s) 202, 272
HapII CCGG 4 cut(s) 244, 300, 420, 440
HgaI GACGC 3 cut(s) 39, 52, 163
HinfI GANTC 4 cut(s) 56, 227, 332, 368
HpaII CCGG 4 cut(s) 244, 300, 420, 440
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 203, 273
Hpy188I TCNGA 3 cut(s) 55, 226, 337
Hpy188III TCNNGA 3 cut(s) 329, 372, 473
Hpy8I GTNNAC 2 cut(s) 203, 273
Hpy99I CGWCG 4 cut(s) 68, 179, 235, 465
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 4 cut(s) 42, 111, 166, 444
Kzo9I GATC 4 cut(s) 94, 129, 149, 214
LweI GCATC 2 cut(s) 196, 387
MalI GATC 4 cut(s) 96, 131, 151, 216
MboI GATC 4 cut(s) 94, 129, 149, 214
MboII GAAGA 3 cut(s) 209, 354, 444
MflI RGATCY 3 cut(s) 94, 129, 149
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 3 cut(s) 72, 360, 392
MlyI GAGTC 3 cut(s) 221, 326, 362
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 51, 120, 175, 218, 221, 296, 314, 368, 420
MspI CCGG 4 cut(s) 244, 300, 420, 440
MvnI CGCG 3 cut(s) 50, 63, 174
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 4 cut(s) 94, 129, 149, 214
NspV TTCGAA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 3 cut(s) 196, 236, 466
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 3 cut(s) 221, 326, 362
PpsI GAGTC 3 cut(s) 221, 326, 362
PspPI GGNCC 1 cut(s) 288
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
PstNI CAGNNNCTG 1 cut(s) 282
PsuI RGATCY 3 cut(s) 94, 129, 149
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
Sau3AI GATC 4 cut(s) 94, 129, 149, 214
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 3 cut(s) 221, 326, 362
SduI GDGCHC 1 cut(s) 29
SetI ASST 7 cut(s) 43, 48, 117, 172, 307, 414, 450
SfaNI GCATC 2 cut(s) 196, 387
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 3 cut(s) 72, 360, 392
SsiI CCGC 1 cut(s) 324
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 213, 390
TasI AATT 3 cut(s) 72, 360, 392
TfiI GAWTC 1 cut(s) 56
TspGWI ACGGA 2 cut(s) 107, 188
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 2 cut(s) 202, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.