Rh5DG016500

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0032565
Physical Location & Seq
Forward (+)
1250701 .. 1252700
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG016500.1

Sequence Viewer

Length: 504 bp
ATGCGATTGGAGGATGTAGGTCAACAGCCACCGGGCAATTTGAACAAGGATCTTAGTCCAGATCATGCCCAGTCTTCCAAAGGATCAGCGGAGGAACTGATCAAGCAAGATCTTCCAAACATTGCATCAACAACCCGCACTCTGCAATTCCTTCTTTGTAGAGAATCACAACCCAAACATCAGGCGGAGCCTGCGAAACCTGTTGCAAAATCTGATCCTGAAATAGGAACCACCGATCCAAACCTCGCAACCTTAGCTGCTTCTCTCAATTCAGAGAGGAACGAAGTCCACACGGATCTATTCTCACAGCCTCAGCTCGCGTCGGAACCTCCCGACAGATCTATTCTCACAGCCTCAGCTCGCGTCGCAATCTCGCGTCGCCTACTCCGTCTACTCCTCCTCGATCTTCAATCCCACTCGTCGGAAGGCTACCGAAACAATCTCTCCGGCTCTACCCAGTCTACCAGTCTCTGCTGGTCCAAAACCGCCAGAGGTGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.12

Weight (kDa)

6.42

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032565)

Species Orthologous Gene IDs
rosa_samantha Rh3AG335600 Rh5DG016500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 391, 461
AccII CGCG 3 cut(s) 320, 363, 376
AciI CCGC 4 cut(s) 89, 136, 185, 486
AclWI GGATC 5 cut(s) 57, 91, 209, 230, 303
AfiI CCNNNNNNNGG 2 cut(s) 224, 421
AgsI TTSAA 2 cut(s) 43, 410
AloI GAACNNNNNNTCC 2 cut(s) 220, 252
AluBI AGCT 3 cut(s) 257, 316, 359
AluI AGCT 3 cut(s) 257, 316, 359
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 5 cut(s) 57, 91, 209, 230, 303
AlwNI CAGNNNCTG 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 66
BbvCI CCTCAGC 2 cut(s) 312, 355
BbvI GCAGC 1 cut(s) 244
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 473
BglII AGATCT 2 cut(s) 109, 338
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 3 cut(s) 189, 229, 327
BmrFI CCNGG 1 cut(s) 33
BmrI ACTGGG 2 cut(s) 64, 451
BmsI GCATC 1 cut(s) 134
BmuI ACTGGG 2 cut(s) 64, 451
BpiI GAAGAC 1 cut(s) 66
Bpu10I CCTNAGC 3 cut(s) 253, 312, 355
BpuMI CCSGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 421
Bse1I ACTGG 3 cut(s) 70, 457, 465
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 224, 421
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 326, 369
BseNI ACTGG 3 cut(s) 70, 457, 465
BseRI GAGGAG 2 cut(s) 386, 389
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 3 cut(s) 320, 363, 376
BsiSI CCGG 2 cut(s) 32, 447
BslI CCNNNNNNNGG 2 cut(s) 224, 421
BsmAI GTCTC 1 cut(s) 473
BspACI CCGC 4 cut(s) 89, 136, 185, 486
BspCNI CTCAG 2 cut(s) 325, 368
BspFNI CGCG 3 cut(s) 320, 363, 376
BspLI GGNNCC 3 cut(s) 189, 229, 327
BspPI GGATC 5 cut(s) 57, 91, 209, 230, 303
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 3 cut(s) 70, 457, 465
BstC8I GCNNGC 3 cut(s) 192, 318, 361
BstDEI CTNAG 4 cut(s) 53, 253, 312, 355
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 3 cut(s) 320, 363, 376
BstMAI GTCTC 1 cut(s) 473
BstMWI GCNNNNNNNGC 3 cut(s) 191, 254, 365
BstSCI CCNGG 1 cut(s) 31
BstUI CGCG 3 cut(s) 320, 363, 376
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 4 cut(s) 49, 109, 295, 338
BstYI RGATCY 4 cut(s) 49, 109, 295, 338
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 192, 318, 361
CaiI CAGNNNCTG 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 477
CseI GACGC 3 cut(s) 309, 352, 365
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 28, 190, 257, 310, 316, 353, 359, 429, 450
CviKI_1 RGCY 9 cut(s) 28, 190, 257, 310, 316, 353, 359, 429, 450
DdeI CTNAG 4 cut(s) 53, 253, 312, 355
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 222
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 2 cut(s) 391, 461
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
HapII CCGG 2 cut(s) 32, 447
HgaI GACGC 3 cut(s) 309, 352, 365
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 32, 447
Hpy166II GTNNAC 4 cut(s) 23, 289, 392, 462
Hpy188I TCNGA 5 cut(s) 214, 274, 325, 424, 503
Hpy188III TCNNGA 3 cut(s) 59, 218, 332
Hpy8I GTNNAC 4 cut(s) 23, 289, 392, 462
Hpy99I CGWCG 4 cut(s) 325, 368, 381, 424
HpyAV CCTTC 2 cut(s) 161, 419
HpyCH4V TGCA 3 cut(s) 125, 145, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 254, 365
HpyF3I CTNAG 4 cut(s) 53, 253, 312, 355
Hsp92II CATG 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 99
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 134
MboII GAAGA 3 cut(s) 66, 104, 398
MflI RGATCY 4 cut(s) 49, 109, 295, 338
MluCI AATT 3 cut(s) 37, 146, 268
MmeI TCCRAC 2 cut(s) 303, 402
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 2 cut(s) 32, 447
MspR9I CCNGG 1 cut(s) 33
MvnI CGCG 3 cut(s) 320, 363, 376
MwoI GCNNNNNNNGC 3 cut(s) 191, 254, 365
NciI CCSGG 1 cut(s) 33
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 189, 229, 327
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 189, 229, 327
PspPI GGNCC 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 471
PsuI RGATCY 4 cut(s) 49, 109, 295, 338
SatI GCNGC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 477
ScrFI CCNGG 1 cut(s) 33
SetI ASST 9 cut(s) 22, 202, 246, 254, 259, 318, 331, 361, 496
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 1 cut(s) 477
Sse9I AATT 3 cut(s) 37, 146, 268
SsiI CCGC 4 cut(s) 89, 136, 185, 486
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 402
TasI AATT 3 cut(s) 37, 146, 268
TfiI GAWTC 1 cut(s) 164
TseI GCWGC 1 cut(s) 257
TspGWI ACGGA 2 cut(s) 308, 377
VpaK11BI GGWCC 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 222
XmiI GTMKAC 2 cut(s) 391, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.