Rh3CG251200

Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
24386168 .. 24386873
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG251200.1

Sequence Viewer

Length: 357 bp
ATGGAGGCAGCAGAGGAGGACGAGGCGGAAGAAATGGAGATGGTAGAAGAGACTCATACCTCCGGCGTTGGTGGAAAGAGGAAGCGCCAGAAAAATTCTAAGGCGACAGACTCTGAAAAGGCCCTCGCTAAGAAGAAGGAAGAGGATGTCGGCTTCATTTGCTTTGACGGGGAGAGCTCGTGCTCTGTAACCGGAGGGGATGTCCCAAGGCATATCATCCTTCGTGTGTTAATCGTGATAAAGCATTCTTTCGGGCCAAGGGTCGATGGAATTGTGGGACTTGAATGTGAGTTTCAAGTTTTCGACACAGCAAGATTGAAAGGCATTGGTTGCAAGTGCGACACAGCAAGATTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

12.93

Weight (kDa)

5.26

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0034136)

Species Orthologous Gene IDs
rosa_samantha Rh3CG251200 Rh3DG247500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 94
AgsI TTSAA 3 cut(s) 284, 296, 319
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw21I GWGCWC 2 cut(s) 179, 185
Alw26I GTCTC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 2 cut(s) 120, 254
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 121, 254
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 179, 185
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 34, 260
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 121, 254
BsaJI CCNNGG 2 cut(s) 206, 257
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 4 cut(s) 164, 186, 194, 216
BseDI CCNNGG 2 cut(s) 206, 257
BseGI GGATG 3 cut(s) 151, 205, 216
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 2 cut(s) 122, 256
BsiHKAI GWGCWC 2 cut(s) 179, 185
BsiSI CCGG 2 cut(s) 63, 192
BslFI GGGAC 2 cut(s) 188, 291
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 188, 291
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 122, 256
Bsp1286I GDGCHC 2 cut(s) 179, 185
BspACI CCGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 122, 256
BssECI CCNNGG 2 cut(s) 206, 257
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 206, 257
Bst2BI CACGAG 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 42, 135
BstAPI GCANNNNNTGC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 99, 129
BstF5I GGATG 3 cut(s) 151, 205, 216
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 159, 330
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 122, 256
BtsCI GGATG 3 cut(s) 151, 205, 216
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 121, 254
CviJI RGCY 4 cut(s) 122, 153, 177, 256
CviKI_1 RGCY 4 cut(s) 122, 153, 177, 256
DdeI CTNAG 2 cut(s) 99, 129
Eam1104I CTCTTC 2 cut(s) 42, 135
EarI CTCTTC 2 cut(s) 42, 135
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 206, 257
Eco24I GRGCYC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 206, 257
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 206, 257
FaiI YATR 2 cut(s) 57, 213
FaqI GGGAC 2 cut(s) 188, 291
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 3 cut(s) 158, 203, 212
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 9
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 2 cut(s) 122, 256
HapII CCGG 2 cut(s) 63, 192
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 52, 110
HpaII CCGG 2 cut(s) 63, 192
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 130, 230
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 330
HpyF3I CTNAG 2 cut(s) 99, 129
HspAI GCGC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 76, 101, 205
Lsp1109I GCAGC 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 4 cut(s) 41, 59, 145, 152
MhlI GDGCHC 2 cut(s) 179, 185
MluCI AATT 2 cut(s) 94, 270
MlyI GAGTC 2 cut(s) 46, 104
MnlI CCTC 8 cut(s) 7, 10, 16, 70, 72, 134, 136, 188
MseI TTAA 1 cut(s) 230
MspI CCGG 2 cut(s) 63, 192
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 159, 330
PctI GAATGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 46, 104
PpsI GAGTC 2 cut(s) 46, 104
Psp124BI GAGCTC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 121, 254
PstNI CAGNNNCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 121, 254
SchI GAGTC 2 cut(s) 46, 104
SduI GDGCHC 2 cut(s) 179, 185
SetI ASST 2 cut(s) 62, 179
Sse9I AATT 2 cut(s) 94, 270
SsiI CCGC 1 cut(s) 26
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 2 cut(s) 206, 257
TaqI TCGA 2 cut(s) 264, 303
TasI AATT 2 cut(s) 94, 270
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 145
XapI RAATTY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.