Rh3DG247500

Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0034136
Physical Location & Seq
Reverse (-)
24273447 .. 24274233
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG247500.1

Sequence Viewer

Length: 435 bp
ATGGAGGCAGCAGAGGAGGACGAGGCGGAAGAAATGGAGATGGTAGAAGAGACTCATACCTCCGGCGTTGGTGGAAAGAGGAAGCGCCAGAAAAATTCTAAGGCGACAGACTCTGAAAAGGTCCTCTCTAAGAAGAAGGAAGAGGATGTCGGCTTCATTTGCTTTGACGGGGAGAGCTCGTGCTCTGTAACCGGAGGGGATGTCCCAAGGCATATCATCCTTCGTGTGGTAATCGTGATAAAGCATTCTTTCGGGCCGAGGGTCGATGGAATTGTGGGACTTGAATGTGAGTTTCAAGTTTTCGACACAGCAAGATTGAAAGGCATTGGTTGCAAGTGCGACACAGCAAGATTGCGAGACAGGCATCCTGTAAACTTCCCATTATCCTTAAGTTGTTTCATGAATGTCCTGAATTTGTTTATAGTTAGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0002009 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009628 GO:0009629 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0030916 GO:0031497 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0034728 GO:0035148 GO:0035239 GO:0035295 GO:0042254 GO:0042255 GO:0042273 GO:0042393 GO:0042471 GO:0042472 GO:0043044 GO:0043049 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043583 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046907 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048646 GO:0048729 GO:0048731 GO:0048839 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051276 GO:0051606 GO:0051641 GO:0051649 GO:0060429 GO:0060562 GO:0060788 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071599 GO:0071600 GO:0071696 GO:0071697 GO:0071704 GO:0071824 GO:0071826 GO:0071840 GO:0072175 GO:0090304 GO:0090596 GO:1901360 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA_5 LRR_9

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

5.84

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034136)

Species Orthologous Gene IDs
rosa_samantha Rh3CG251200 Rh3DG247500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AcsI RAATTY 2 cut(s) 94, 412
AfiI CCNNNNNNNGG 1 cut(s) 226
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 3 cut(s) 284, 296, 319
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw21I GWGCWC 2 cut(s) 179, 185
Alw26I GTCTC 2 cut(s) 44, 351
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 94, 412
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 121, 254
AvaII GGWCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 179, 185
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 34, 260
BcoDI GTCTC 2 cut(s) 44, 351
BfoI RGCGCY 1 cut(s) 88
BfrI CTTAAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 254
BmsI GCATC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 206, 257
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 4 cut(s) 164, 186, 194, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 206, 257
BseGI GGATG 4 cut(s) 151, 205, 216, 364
BseLI CCNNNNNNNGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 179, 185
BsiSI CCGG 2 cut(s) 63, 192
BslFI GGGAC 2 cut(s) 188, 291
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 44, 351
BsmFI GGGAC 2 cut(s) 188, 291
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 179, 185
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 256
BspHI TCATGA 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 206, 257
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 42, 135
BstAFI CTTAAG 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 99, 129
BstF5I GGATG 4 cut(s) 151, 205, 216, 364
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 44, 351
BstMWI GCNNNNNNNGC 3 cut(s) 159, 330, 361
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 4 cut(s) 151, 205, 216, 364
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 121, 254
CviAII CATG 1 cut(s) 400
CviJI RGCY 3 cut(s) 153, 177, 256
CviKI_1 RGCY 3 cut(s) 153, 177, 256
DdeI CTNAG 2 cut(s) 99, 129
Eam1104I CTCTTC 2 cut(s) 42, 135
EarI CTCTTC 2 cut(s) 42, 135
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 403
FaiI YATR 4 cut(s) 57, 213, 401, 422
FaqI GGGAC 2 cut(s) 188, 291
FatI CATG 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 4 cut(s) 158, 203, 212, 351
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 9
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 256
HapII CCGG 2 cut(s) 63, 192
HhaI GCGC 1 cut(s) 87
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 52, 110
HpaII CCGG 2 cut(s) 63, 192
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 235, 400, 409
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 130, 230
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 330, 361
HpyF3I CTNAG 2 cut(s) 99, 129
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 76, 101, 205, 346, 381, 422
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 4 cut(s) 41, 59, 145, 152
MhlI GDGCHC 2 cut(s) 179, 185
MluCI AATT 3 cut(s) 94, 270, 412
MlyI GAGTC 2 cut(s) 46, 104
MnlI CCTC 9 cut(s) 7, 10, 16, 70, 72, 134, 136, 188, 252
MseI TTAA 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 2 cut(s) 63, 192
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 159, 330, 361
NlaIII CATG 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 282
PagI TCATGA 1 cut(s) 399
PctI GAATGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 46, 104
PpsI GAGTC 2 cut(s) 46, 104
PpuMI RGGWCCY 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 121
PspPI GGNCC 2 cut(s) 121, 254
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 121, 254
SchI GAGTC 2 cut(s) 46, 104
SduI GDGCHC 2 cut(s) 179, 185
SetI ASST 4 cut(s) 62, 123, 179, 431
SfaNI GCATC 1 cut(s) 373
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 3 cut(s) 94, 270, 412
SsiI CCGC 1 cut(s) 26
SstI GAGCTC 1 cut(s) 179
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 2 cut(s) 264, 303
TasI AATT 3 cut(s) 94, 270, 412
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 145, 388, 416
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 2 cut(s) 94, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.