Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0029941

Physical Location & Seq

Genomic Coordinates Reverse (-)

25666692 .. 25667607

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAGATCAAAGCTTTTCAAATCAGCGCAATATGGTCATGATGCCATTGAGACAATGCTATCTGATGTTTCCTTGGCCATTTCATTGCTGACAAATAGGAAAACATGGGACTTGATCATGATTCTAAACTCCAAAAGATTCCTAGACAGATCGATTACTACCAAACGCACGGAGCTGCACAATTCGTTATCTTCTTCCTGGCCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0005575 GO:0005623 GO:0007346 GO:0008150 GO:0012505 GO:0019220 GO:0019222 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0080090 GO:1904029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF773

Protein Analysis

70

Amino Acids

8.11

Weight (kDa)

10.11

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDK5RAP3	PF05600	9 - 54	9e-10	CDK5 regulatory subunit-associated protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0480231
rosa_samantha	Rh3CG262900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	75, 200
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	2 cut(s)	13, 175
AluI	AGCT	2 cut(s)	13, 175
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	75, 200
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	28
BalI	TGGCCA	2 cut(s)	77, 202
BbvI	GCAGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	199
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	77, 202
BshVI	ATCGAT	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	77, 202
Bsp143I	GATC	3 cut(s)	5, 114, 149
BspANI	GGCC	2 cut(s)	77, 202
BspDI	ATCGAT	1 cut(s)	152
BspHI	TCATGA	2 cut(s)	37, 117
BsrDI	GCAATG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	5, 114, 149
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	8, 117, 152
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	5, 114, 149
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	77, 202
BsuTUI	ATCGAT	1 cut(s)	152
CciI	TCATGA	2 cut(s)	37, 117
CfoI	GCGC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	152
CviAII	CATG	3 cut(s)	38, 105, 118
CviJI	RGCY	4 cut(s)	13, 77, 175, 202
CviKI_1	RGCY	4 cut(s)	13, 77, 175, 202
DpnI	GATC	3 cut(s)	7, 116, 151
DpnII	GATC	3 cut(s)	5, 114, 149
EaeI	YGGCCR	2 cut(s)	75, 200
Eco130I	CCWWGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	41, 108, 121
FaiI	YATR	4 cut(s)	33, 39, 106, 119
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	37, 104, 117
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	77, 202
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	41, 108, 121
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	121, 138
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	38, 118
HpyCH4V	TGCA	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	41, 108, 121
HspAI	GCGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	5, 114, 149
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	143
MalI	GATC	3 cut(s)	7, 116, 151
MboI	GATC	3 cut(s)	5, 114, 149
MboII	GAAGA	2 cut(s)	183, 186
MlsI	TGGCCA	2 cut(s)	77, 202
MluCI	AATT	1 cut(s)	181
MluNI	TGGCCA	2 cut(s)	77, 202
Mox20I	TGGCCA	2 cut(s)	77, 202
MscI	TGGCCA	2 cut(s)	77, 202
Msp20I	TGGCCA	2 cut(s)	77, 202
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NdeII	GATC	3 cut(s)	5, 114, 149
NlaIII	CATG	3 cut(s)	41, 108, 121
PagI	TCATGA	2 cut(s)	37, 117
PfeI	GAWTC	2 cut(s)	121, 138
PkrI	GCNGC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	5, 114, 149
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	2 cut(s)	15, 177
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	7 cut(s)	50, 85, 117, 124, 130, 155, 181
Sse9I	AATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	121, 138
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	185
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.