Rh3CG297400

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0031376
Physical Location & Seq
Forward (+)
30481712 .. 30482044
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG297400.1

Sequence Viewer

Length: 333 bp
ATGGAGTCTACAAGTGATGCTTCACTGCCTTCAGGACCAGACGCCAGAAAGAGAAGAGAGAACTATTTCTACGACCCAACTATCGGCCTGCACTACTACGACCATGTCCATCCAATGAAACCCCACCACATTCATGAGATGGTCCACAACCTCATCGTCAACTACGGCCTTCACCGTAAAATGGACATCAACTGCCCTTTCCCGGCTACCACCGACGACCTACGCCAATTCCACTCCGATGACTACGTCAACTTCCTCGCCTCCGTCTCCCCCAACACCCTTAATGATACTCCCTTTTCTCGCCACAAGGAGCGCTTCAACGCTCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010154 GO:0010228 GO:0010431 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0033993 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048519 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090351 GO:0097305 GO:0098732 GO:0140096 GO:1901564 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

110

Amino Acids

12.84

Weight (kDa)

6.33

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 37 - 96 6.4e-06 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031376)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006653.1_g000010
rosa_samantha Rh3CG297400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 42
AfeI AGCGCT 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 83, 181, 202
AgsI TTSAA 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 2 cut(s) 85, 166
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 35, 142
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 35, 142
BccI CCATC 2 cut(s) 117, 133
BceAI ACGGC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 35, 142
BmgT120I GGNCC 2 cut(s) 35, 142
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 181, 202
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 83, 181, 202
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 2 cut(s) 87, 168
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 83, 181, 202
BsmAI GTCTC 1 cut(s) 271
BsmBI CGTCTC 1 cut(s) 271
BsnI GGCC 2 cut(s) 87, 168
BspANI GGCC 2 cut(s) 87, 168
BspHI TCATGA 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 87, 168
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 89
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 35, 142
CseI GACGC 1 cut(s) 50
CviAII CATG 2 cut(s) 104, 134
CviJI RGCY 3 cut(s) 87, 168, 206
CviKI_1 RGCY 3 cut(s) 87, 168, 206
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 35, 142
Eco47III AGCGCT 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 2 cut(s) 107, 137
FaiI YATR 3 cut(s) 105, 135, 331
FalI AAGNNNNNCTT 3 cut(s) 36, 299, 331
FatI CATG 2 cut(s) 103, 133
FblI GTMKAC 1 cut(s) 8
FokI GGATG 1 cut(s) 96
GlaI GCGC 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 87, 168
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 107, 137
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 2 cut(s) 160, 250
HindII GTYRAC 2 cut(s) 160, 250
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 4 cut(s) 9, 145, 160, 250
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 33, 134
Hpy8I GTNNAC 4 cut(s) 9, 145, 160, 250
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 39, 179
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 107, 137
HspAI GCGC 1 cut(s) 313
LmnI GCTCC 2 cut(s) 310, 328
LpnPI CCDG 5 cut(s) 18, 51, 58, 101, 216
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 246
MboII GAAGA 1 cut(s) 66
MluCI AATT 1 cut(s) 227
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 161, 266, 271
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 132, 237
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
NciI CCSGG 1 cut(s) 203
NlaIII CATG 2 cut(s) 107, 137
PagI TCATGA 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 65
PflFI GACNNNGTC 2 cut(s) 104, 245
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 35, 142
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsyI GACNNNGTC 2 cut(s) 104, 245
RseI CAYNNNNRTG 2 cut(s) 132, 237
SaqAI TTAA 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 35, 142
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 203
SetI ASST 3 cut(s) 153, 222, 249
SfaNI GCATC 1 cut(s) 7
SinI GGWCC 2 cut(s) 35, 142
SmiMI CAYNNNNRTG 2 cut(s) 132, 237
Sse9I AATT 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 249
TasI AATT 1 cut(s) 227
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 122, 131
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 2 cut(s) 104, 245
VpaK11BI GGWCC 2 cut(s) 35, 142
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.