Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0022711

Physical Location & Seq

Genomic Coordinates Reverse (-)

33949572 .. 33958066

Gene Structure 8495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGAGTGAATTCCGAAGACCCAATTCTGATTCATTCCTTCCCAACAATCATCATCTCAAAAACTCCTTGGCATAGATTGTCGATCATGCTGGAGCTGTCGGTTTTGGATAGAGGAGACGCGGGATTCACTGCTGCTAAACAATTGGGTGGTGAGAGGTGTAAATTGACATCAGATTGGAGATTAAGGGTTGCGGAGCAAGCTTTCTCAGCAGTTGGTGCTATGTTTCTATCTGTGATTATTGTTAATCCACTTGATGTCGCCAAGGTGGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

92

Amino Acids

10.08

Weight (kDa)

6.71

Isoelectric Point (pI)

22.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022711)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487621
rosa_samantha	Rh3BG319200 Rh3CG317300 Rh3DG315500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	122, 194
AcsI	RAATTY	1 cut(s)	10
AluBI	AGCT	2 cut(s)	97, 203
AluI	AGCT	2 cut(s)	97, 203
Alw26I	GTCTC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	68, 264
BseDI	CCNNGG	2 cut(s)	68, 264
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	122, 194
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	68, 264
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	68, 264
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 218
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	201
CseI	GACGC	1 cut(s)	128
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	2 cut(s)	97, 203
CviKI_1	RGCY	2 cut(s)	97, 203
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	68, 264
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	68, 264
ErhI	CCWWGG	2 cut(s)	68, 264
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	75, 89, 224, 275
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	31, 126
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	16, 30, 175
HpyAV	CCTTC	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 218
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	94, 196
LpnPI	CCDG	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	121
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	29
MfeI	CAATTG	1 cut(s)	143
MluCI	AATT	4 cut(s)	10, 24, 143, 164
MnlI	CCTC	2 cut(s)	107, 150
MseI	TTAA	2 cut(s)	185, 246
MunI	CAATTG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 218
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	31, 126
PkrI	GCNGC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	185, 246
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	84
SetI	ASST	4 cut(s)	99, 161, 205, 270
SgeI	CNNG	7 cut(s)	81, 100, 104, 133, 135, 212, 266
Sse9I	AATT	4 cut(s)	10, 24, 143, 164
SsiI	CCGC	2 cut(s)	122, 194
StyI	CCWWGG	2 cut(s)	68, 264
TaqI	TCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	10, 24, 143, 164
TfiI	GAWTC	2 cut(s)	31, 126
Tru1I	TTAA	2 cut(s)	185, 246
Tru9I	TTAA	2 cut(s)	185, 246
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.