Rh3CG343000

AarF domain-containing protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
38737264 .. 38738138
875 bp
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UTR
Exon/CDS
Intron
Rh3CG343000.1

Sequence Viewer

Length: 381 bp
ATGTCAACTAAAGAGAGTAGGAAATTAAAGCAAGAGCTGCAGTCCCTAAAGATGAAGAACATATCTTCATTTATGGAATCTTTGCCATCTGACTTCCTCACAATATTGCGTACAGACGGAGCATTGAGGTCTATTGCTAGTAAGTTGGGCGCTTCACATAGAGTCAGGATACTAGCCTATGCCAAATATGCACTATATGGTCTTTCCCCAAAGTTGAATCCAGAATGTGACAATGCCATTAAAGTAAAGTTCTCACAATTGACAGCATATGTGAGTTACCTTCAGTTAAGGCTTATTCTTGAGGTCCTAGAGCTGCTTTCTTGGATAGCAAAGGTCAAGCAGCTTCTATTTAATTTTTATGAAAAGACAGGTGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

9.78

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029495)

Species Orthologous Gene IDs
pyrus_communis pycom17g26900
rosa_samantha Rh3CG343000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 3 cut(s) 37, 313, 343
AluI AGCT 3 cut(s) 37, 313, 343
ApeKI GCWGC 3 cut(s) 37, 313, 340
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 24, 300, 352
BccI CCATC 1 cut(s) 94
BciVI GTATCC 1 cut(s) 162
BfaI CTAG 3 cut(s) 138, 173, 308
BfmI CTRYAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 3 cut(s) 38, 314, 341
BlsI GCNGC 3 cut(s) 39, 315, 342
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 320
BseXI GCAGC 3 cut(s) 24, 300, 352
BslFI GGGAC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 37, 188
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 24, 300, 352
BsuI GTATCC 1 cut(s) 162
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 5 cut(s) 37, 176, 292, 313, 343
CviKI_1 RGCY 5 cut(s) 37, 176, 292, 313, 343
CviQI GTAC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 304
FaqI GGGAC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 38, 314, 341
Fsp4HI GCNGC 3 cut(s) 38, 314, 341
FspBI CTAG 3 cut(s) 138, 173, 308
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 38, 314, 341
HaeII RGCGCY 1 cut(s) 153
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 77, 162, 217
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 166, 221, 299
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 40, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 188
HspAI GCGC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 151, 234, 354
Lsp1109I GCAGC 3 cut(s) 24, 300, 352
MaeI CTAG 3 cut(s) 138, 173, 308
MaeIII GTNAC 2 cut(s) 227, 275
MboII GAAGA 2 cut(s) 57, 67
MfeI CAATTG 1 cut(s) 257
MluCI AATT 3 cut(s) 23, 257, 352
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 3 cut(s) 107, 120, 295
MseI TTAA 4 cut(s) 26, 240, 287, 351
MunI CAATTG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 37, 188
NdeI CATATG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 77, 217
PkrI GCNGC 3 cut(s) 39, 315, 342
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 304
PspPI GGNCC 1 cut(s) 304
PspPPI RGGWCCY 1 cut(s) 304
PstI CTGCAG 1 cut(s) 42
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 4 cut(s) 26, 240, 287, 351
SatI GCNGC 3 cut(s) 38, 314, 341
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 171
SetI ASST 8 cut(s) 39, 131, 282, 306, 315, 336, 345, 373
SfcI CTRYAG 1 cut(s) 38
SgeI CNNG 9 cut(s) 44, 150, 178, 185, 233, 311, 320, 333, 349
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 3 cut(s) 23, 257, 352
SspI AATATT 1 cut(s) 105
SspMI CTAG 3 cut(s) 138, 173, 308
TasI AATT 3 cut(s) 23, 257, 352
TfiI GAWTC 2 cut(s) 77, 217
Tru1I TTAA 4 cut(s) 26, 240, 287, 351
Tru9I TTAA 4 cut(s) 26, 240, 287, 351
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 3 cut(s) 37, 313, 340
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 57, 68, 375
TspGWI ACGGA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 304
XspI CTAG 3 cut(s) 138, 173, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.