Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0030506

Physical Location & Seq

Genomic Coordinates Forward (+)

5163685 .. 5165261

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTGGTGCGCAAAGAGTCGGAGAACTGTGAGTGCTTGCAAGCCCAAAGTATATTTTCCTCTTCTGAACTCAGCAAAACCTATATCGGATATCAAATTGGCAAAATATGGTGAGTGGTTTAATGATTGCAGTGATGAGATCAGAGAATGTTGTACCAATGCCCTACACAGGCTTCACAAGCAATATGGTTGGAAGACTGTAGAGGTGACCATACCAGAGATAGAGGTGATGCGGTTGGCACATTACTTGACAATTGGATCAGAGTGTAGCACTTCGCTTAGTTCTCATCTAGAAAAGTTGTATGTTGTTGACCACCACTACTCTTCTTTTAATTACTTTATTGAAACAAACAAGAAATCCAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase FPP

Protein Analysis

122

Amino Acids

14.2

Weight (kDa)

8.66

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0030506)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0228001
rosa_samantha	Rh3DG074300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	344
AlwI	GGATC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	122, 217, 238
BbsI	GAAGAC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	138, 257
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	83
BspPI	GGATC	1 cut(s)	265
BssMI	GATC	2 cut(s)	138, 257
Bst4CI	ACNGT	2 cut(s)	28, 199
Bst6I	CTCTTC	2 cut(s)	66, 328
BstC8I	GCNNGC	2 cut(s)	37, 41
BstDEI	CTNAG	2 cut(s)	70, 278
BstEII	GGTNACC	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	141, 260
BstMBI	GATC	2 cut(s)	138, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	37, 41
CfoI	GCGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	153
CviJI	RGCY	2 cut(s)	43, 172
CviKI_1	RGCY	2 cut(s)	43, 172
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	70, 278
DpnI	GATC	2 cut(s)	140, 259
DpnII	GATC	2 cut(s)	138, 257
Eam1104I	CTCTTC	2 cut(s)	66, 328
EarI	CTCTTC	2 cut(s)	66, 328
Eco32I	GATATC	1 cut(s)	91
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	91
FaiI	YATR	6 cut(s)	52, 83, 108, 186, 212, 303
FspBI	CTAG	1 cut(s)	290
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	3 cut(s)	122, 217, 238
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	5 cut(s)	21, 66, 88, 143, 262
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	28, 199
HpyCH4V	TGCA	2 cut(s)	39, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	70, 278
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	138, 257
LpnPI	CCDG	2 cut(s)	154, 228
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	140, 259
MboI	GATC	2 cut(s)	138, 257
MboII	GAAGA	3 cut(s)	53, 205, 315
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	3 cut(s)	95, 252, 331
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	69, 196, 217
MseI	TTAA	2 cut(s)	120, 330
MunI	CAATTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	138, 257
NmuCI	GTSAC	1 cut(s)	205
NsbI	TGCGCA	1 cut(s)	10
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	120, 330
Sau3AI	GATC	2 cut(s)	138, 257
SchI	GAGTC	1 cut(s)	25
SetI	ASST	3 cut(s)	82, 207, 228
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	198
SgeI	CNNG	8 cut(s)	48, 52, 181, 190, 227, 259, 302, 364
Sse9I	AATT	3 cut(s)	95, 252, 331
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	28, 199
TasI	AATT	3 cut(s)	95, 252, 331
Tru1I	TTAA	2 cut(s)	120, 330
Tru9I	TTAA	2 cut(s)	120, 330
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	289
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.