Rh3DG288500

Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
29774694 .. 29775718
1025 bp
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UTR
Exon/CDS
Intron
Rh3DG288500.1

Sequence Viewer

Length: 177 bp
ATGGGAACAGTTGTTAACGCTGCCAACAAGGAGGCTAATCGAAGCTTTGCCGATCTGAATCCTACTGTTGTTTTCGTCTTGGGTGGCCCAAGCAGTGGAAAGGGTACCCAATGCGCAAACATTGTTCAGCACTTTGGGTTTACACATCTGAGTGCTGGTGATCTACTACGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

5.99

Weight (kDa)

8.0

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 26 - 58 4.1e-12 Adenylate kinase
AAA_17 PF13207 27 - 58 3.4e-12 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025573)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003919.1_g000023 Rmu_sc0006244.1_g000055
rosa_samantha Rh3DG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 95
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 7
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 95
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 52, 160
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BssMI GATC 2 cut(s) 52, 160
Bst4CI ACNGT 2 cut(s) 10, 67
BstDEI CTNAG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 55, 163
BstMBI GATC 2 cut(s) 52, 160
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 3 cut(s) 35, 45, 87
CviKI_1 RGCY 3 cut(s) 35, 45, 87
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 54, 162
DpnII GATC 2 cut(s) 52, 160
FaiI YATR 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 87
HhaI GCGC 1 cut(s) 116
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 1 cut(s) 58
HpaI GTTAAC 1 cut(s) 16
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 16, 141
Hpy188I TCNGA 2 cut(s) 57, 150
Hpy8I GTNNAC 2 cut(s) 16, 141
HpyCH4III ACNGT 2 cut(s) 10, 67
HpyF3I CTNAG 1 cut(s) 149
HspAI GCGC 1 cut(s) 114
KpnI GGTACC 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 52, 160
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 7
MalI GATC 2 cut(s) 54, 162
MboI GATC 2 cut(s) 52, 160
MnlI CCTC 1 cut(s) 25
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 150
NdeII GATC 2 cut(s) 52, 160
NlaIV GGNNCC 1 cut(s) 106
NsbI TGCGCA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 52, 160
Sau96I GGNCC 1 cut(s) 86
SetI ASST 1 cut(s) 47
SgeI CNNG 4 cut(s) 40, 91, 102, 168
SmiMI CAYNNNNRTG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 10, 67
TaqI TCGA 1 cut(s) 40
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 20
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.