Rh3DG327900

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
35981526 .. 35982037
512 bp
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UTR
Exon/CDS
Intron
Rh3DG327900.1

Sequence Viewer

Length: 300 bp
ATGACAAAAGTGGCTGTTCTTCTCACAGTTTTGGATGATATCCACGATGCATATGGTACATTTGAAGAACTCGTGATTTTTACCAAAGCAATTGACAGGTGGGATCTCAAATGCATAGATGAACTCCCGGATTATATGAAAATATTCTATTATGAACTTTTGAATCTTTTCAATGAAATTGACGAGGTGATATCAAAGGAAGGAAGATCACACCGAGTTTCATATGCAATACAAGCTACGAAAAATCAAGCCGATCGTATTTCAACGAGGCTCAATGGTTACACGAAGGACGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.57

Weight (kDa)

4.89

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 87 6.2e-28 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 3 - 94 4.6e-15 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025508)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001353.1_g000006
rosa_samantha Rh3DG327900 Rh3DG328400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 111
AfaI GTAC 1 cut(s) 58
AgsI TTSAA 4 cut(s) 65, 163, 172, 264
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 1 cut(s) 111
Asp700I GAANNNNTTC 2 cut(s) 143, 167
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 199
BauI CACGAG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 1 cut(s) 128
BsmI GAATGC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 103, 206, 253
BspPI GGATC 1 cut(s) 111
BssMI GATC 3 cut(s) 103, 206, 253
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 28
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 106, 209, 256
BstMBI GATC 3 cut(s) 103, 206, 253
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 40
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 4 cut(s) 14, 236, 251, 271
CviKI_1 RGCY 4 cut(s) 14, 236, 251, 271
CviQI GTAC 1 cut(s) 57
DpnI GATC 3 cut(s) 105, 208, 255
DpnII GATC 3 cut(s) 103, 206, 253
Eco32I GATATC 2 cut(s) 40, 192
EcoRV GATATC 2 cut(s) 40, 192
EcoT22I ATGCAT 2 cut(s) 52, 116
FaiI YATR 8 cut(s) 52, 54, 116, 135, 137, 153, 223, 225
FauNDI CATATG 2 cut(s) 52, 223
FokI GGATG 1 cut(s) 47
HapII CCGG 1 cut(s) 128
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 194, 280
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 50, 114, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Kzo9I GATC 3 cut(s) 103, 206, 253
LpnPI CCDG 2 cut(s) 82, 141
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 278
MalI GATC 3 cut(s) 105, 208, 255
MboI GATC 3 cut(s) 103, 206, 253
MboII GAAGA 3 cut(s) 11, 77, 216
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 90, 177
MnlI CCTC 2 cut(s) 178, 261
Mph1103I ATGCAT 2 cut(s) 52, 116
MroXI GAANNNNTTC 2 cut(s) 143, 167
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 128
NdeI CATATG 2 cut(s) 52, 223
NdeII GATC 3 cut(s) 103, 206, 253
NsiI ATGCAT 2 cut(s) 52, 116
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 2 cut(s) 143, 167
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 126
Ple19I CGATCG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 103
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
Sau3AI GATC 3 cut(s) 103, 206, 253
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 101, 189, 238
SfaNI GCATC 1 cut(s) 37
Sse9I AATT 2 cut(s) 90, 177
SspI AATATT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 28
TasI AATT 2 cut(s) 90, 177
TfiI GAWTC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 135, 152, 168, 189, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmnI GAANNNNTTC 2 cut(s) 143, 167
Zsp2I ATGCAT 2 cut(s) 52, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.