Rh3DG328400

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
36109027 .. 36109538
512 bp
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UTR
Exon/CDS
Intron
Rh3DG328400.1

Sequence Viewer

Length: 249 bp
ATGACAAAAGTGGCTGTTCTTCTCACAGTTTTGGATGATATCCACGATGCATATGGTACATTTGAAGAACTCGTGATTTTTACCAAAGCAATTGACAGGTGGGATCTCAAATGCATAGATGAACTCCCGGATTATATGAAAATATTCTATTATGAACTTTTGAATCTTTTCAATGAAATTGACGAGACGAAAAATCAAGCCGATCGTATTTCAACGAGGCTCAATGGTTACACGAAGGACGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.69

Weight (kDa)

4.44

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 77 2.7e-24 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 3 - 68 6.1e-14 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025508)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001353.1_g000006
rosa_samantha Rh3DG327900 Rh3DG328400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 111
AfaI GTAC 1 cut(s) 58
AgsI TTSAA 4 cut(s) 65, 163, 172, 213
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 111
Asp700I GAANNNNTTC 2 cut(s) 143, 167
AsuC2I CCSGG 1 cut(s) 128
BauI CACGAG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 103, 202
BspPI GGATC 1 cut(s) 111
BssMI GATC 2 cut(s) 103, 202
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 28
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 2 cut(s) 106, 205
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 103, 202
BstMCI CGRYCG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 40
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 3 cut(s) 14, 200, 220
CviKI_1 RGCY 3 cut(s) 14, 200, 220
CviQI GTAC 1 cut(s) 57
DpnI GATC 2 cut(s) 105, 204
DpnII GATC 2 cut(s) 103, 202
Eco32I GATATC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 40
EcoT22I ATGCAT 2 cut(s) 52, 116
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 6 cut(s) 52, 54, 116, 135, 137, 153
FauNDI CATATG 1 cut(s) 52
FokI GGATG 1 cut(s) 47
HapII CCGG 1 cut(s) 128
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 50, 114
Kzo9I GATC 2 cut(s) 103, 202
LpnPI CCDG 2 cut(s) 82, 141
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 105, 204
MboI GATC 2 cut(s) 103, 202
MboII GAAGA 2 cut(s) 11, 77
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 90, 177
MnlI CCTC 1 cut(s) 210
Mph1103I ATGCAT 2 cut(s) 52, 116
MroXI GAANNNNTTC 2 cut(s) 143, 167
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 103, 202
NsiI ATGCAT 2 cut(s) 52, 116
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 2 cut(s) 143, 167
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 126
Ple19I CGATCG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 103
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 103, 202
ScrFI CCNGG 1 cut(s) 128
SetI ASST 1 cut(s) 101
SfaNI GCATC 1 cut(s) 37
Sse9I AATT 2 cut(s) 90, 177
SspI AATATT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 28
TasI AATT 2 cut(s) 90, 177
TfiI GAWTC 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 135, 152, 168, 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmnI GAANNNNTTC 2 cut(s) 143, 167
Zsp2I ATGCAT 2 cut(s) 52, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.