Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0022683

Physical Location & Seq

Genomic Coordinates Reverse (-)

5154747 .. 5155064

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG026800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGGGAAGACCGGAAGAGCTGCAGGTTGAGGTGGATGAACTACCTGAGGCCTGATTTGAAGAGAGGTCCATTCTCACAGCAGGAAGAGAATTTGATAATAGAGCTTCATGCAGTTCTGGGCAACAGAGAAAATGAGATTTTGTGCTACAACAGGTGGTCTCAGATTGCAGCTCAATTACCCGGAAGGACAGACAATGAGGTCTTGGTGATGGTGAAAAGAAAAATAGACACTAATTTTGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

82

Amino Acids

9.76

Weight (kDa)

6.58

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	22 - 68	7.2e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145301
rosa_rugosa	Rorug02G0632100 Rorug04G0193800
rosa_samantha	Rh4AG026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	61, 242
AluBI	AGCT	3 cut(s)	21, 106, 173
AluI	AGCT	3 cut(s)	21, 106, 173
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	21, 170
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	220, 226
AvaII	GGWCC	1 cut(s)	68
AxyI	CCTNAGG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	8, 182
BccI	CCATC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	22, 171
BlsI	GCNGC	2 cut(s)	23, 172
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	38, 176
BseXI	GCAGC	2 cut(s)	8, 182
BshFI	GGCC	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	13, 183
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	39, 175
BspMAI	CTGCAG	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	165
Bst6I	CTCTTC	3 cut(s)	11, 56, 81
BstDEI	CTNAG	2 cut(s)	47, 162
BstF5I	GGATG	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	8, 182
BstV2I	GAAGAC	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	68
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	21, 52, 106, 173
CviKI_1	RGCY	4 cut(s)	21, 52, 106, 173
DdeI	CTNAG	2 cut(s)	47, 162
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	3 cut(s)	11, 56, 81
EarI	CTCTTC	3 cut(s)	11, 56, 81
Eco147I	AGGCCT	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	113
FaiI	YATR	1 cut(s)	111
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	22, 171
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	22, 171
GluI	GCNGC	2 cut(s)	22, 171
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	2 cut(s)	13, 183
Hin1II	CATG	1 cut(s)	113
HpaII	CCGG	2 cut(s)	13, 183
HphI	GGTGA	2 cut(s)	220, 226
Hpy188I	TCNGA	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	24, 113, 170
HpyF3I	CTNAG	2 cut(s)	47, 162
Hsp92II	CATG	1 cut(s)	113
LguI	GCTCTTC	1 cut(s)	11
LpnPI	CCDG	8 cut(s)	10, 26, 59, 66, 68, 104, 139, 196
Lsp1109I	GCAGC	2 cut(s)	8, 182
MboII	GAAGA	4 cut(s)	20, 28, 73, 98
MluCI	AATT	3 cut(s)	91, 176, 235
MnlI	CCTC	4 cut(s)	24, 42, 59, 193
MspI	CCGG	2 cut(s)	13, 183
MspR9I	CCNGG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	183
NlaIII	CATG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	23, 172
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	22, 171
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	9 cut(s)	23, 29, 35, 48, 70, 108, 158, 175, 204
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	3 cut(s)	91, 176, 235
SseBI	AGGCCT	1 cut(s)	52
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	181
TasI	AATT	3 cut(s)	91, 176, 235
TseI	GCWGC	2 cut(s)	21, 170
TspDTI	ATGAA	2 cut(s)	53, 98
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.