Rh4AG070300

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0023333
Physical Location & Seq
Forward (+)
14545078 .. 14547829
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG070300.1

Sequence Viewer

Length: 501 bp
ATGTGCATATTTTGGTCCGTCTCGACCATCGTCGCTGCGAAATTTGTGGGTGTTGGATTGGTTTTCGGGTGCAGCTTCTGGGATTTCTTTACTCCTTCGGTTCTTCAGCTCAGGATTTCTTTCCCCAAAAAGGGTTGGCTTGCCTTCAAAGAAACTTTCCTTGCAATCGTGGCCCTGGAATCTGCAAGTATGGTCGAAGCCTTAACCATTGTTATTTGCAAACAATTTCTTGCTGGTCTGCTTGAGCGCGGCAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGAATTATCTGCAGAGAACTTGCTGACAACTACTGCTTTTACCAGCCTCAATATGATTCATTGCAAGGGGCATGGGAATGGGCACATTCTAGACAGTGGAGAACAGATAGGATTGAAGCATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGGTTTGAAGTAGTCTATGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

166

Amino Acids

18.25

Weight (kDa)

8.98

Isoelectric Point (pI)

16.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023333)

Species Orthologous Gene IDs
rosa_samantha Rh4AG070300 Rh4BG068200 Rh4CG076100
rosa_wichuraiana Rw2G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 465
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 130, 131
AgsI TTSAA 3 cut(s) 148, 430, 482
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 75, 109
AluI AGCT 2 cut(s) 75, 109
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 466
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 35, 72
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 1 cut(s) 272
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 15, 172
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 22, 84
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 465
BisI GCNGC 3 cut(s) 36, 73, 250
BlsI GCNGC 3 cut(s) 37, 74, 251
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 15, 172
BmrFI CCNGG 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 174, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 131
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 174, 453
BseLI CCNNNNNNNGG 2 cut(s) 130, 131
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 22, 84
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 130, 131
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 458
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 174, 453
BssMI GATC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 461
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 458
BstMWI GCNNNNNNNGC 3 cut(s) 170, 439, 448
BstNI CCWGG 1 cut(s) 176
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 22, 84
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 415
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 15, 172
CviAII CATG 1 cut(s) 386
CviJI RGCY 9 cut(s) 75, 109, 139, 173, 200, 284, 360, 442, 451
CviKI_1 RGCY 9 cut(s) 75, 109, 139, 173, 200, 284, 360, 442, 451
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 1 cut(s) 389
FaiI YATR 6 cut(s) 8, 191, 368, 387, 446, 492
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 36, 73, 250
Fsp4HI GCNGC 3 cut(s) 36, 73, 250
FspBI CTAG 1 cut(s) 404
GlaI GCGC 1 cut(s) 248
GluI GCNGC 3 cut(s) 36, 73, 250
HaeIII GGCC 1 cut(s) 173
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 2 cut(s) 179, 370
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 22, 112, 314, 404
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 105, 154
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 7 cut(s) 6, 72, 164, 185, 219, 326, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 439, 448
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 458
LpnPI CCDG 9 cut(s) 64, 97, 161, 188, 219, 370, 447, 456, 460
Lsp1109I GCAGC 2 cut(s) 22, 84
MaeI CTAG 1 cut(s) 404
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MboII GAAGA 1 cut(s) 95
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 5 cut(s) 41, 224, 269, 317, 496
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 1 cut(s) 371
MseI TTAA 3 cut(s) 203, 272, 438
MslI CAYNNNNRTG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 170, 439, 448
NdeII GATC 1 cut(s) 458
NlaIII CATG 1 cut(s) 389
PfeI GAWTC 2 cut(s) 179, 370
PkrI GCNGC 3 cut(s) 37, 74, 251
PshAI GACNNNNGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspPI GGNCC 2 cut(s) 15, 172
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 3 cut(s) 203, 272, 438
SatI GCNGC 3 cut(s) 36, 73, 250
Sau3AI GATC 1 cut(s) 458
Sau96I GGNCC 2 cut(s) 15, 172
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 399
SetI ASST 3 cut(s) 77, 111, 479
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 5 cut(s) 41, 224, 269, 317, 496
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 23, 195
TasI AATT 5 cut(s) 41, 224, 269, 317, 496
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 179, 370
Tru1I TTAA 3 cut(s) 203, 272, 438
Tru9I TTAA 3 cut(s) 203, 272, 438
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 35, 72
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 15
VspI ATTAAT 1 cut(s) 272
XapI RAATTY 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 403
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.