PAS fold
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_samantha | Rh4AG070300 Rh4BG068200 Rh4CG076100 |
| rosa_wichuraiana | Rw2G042550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 381 |
| AccII | CGCG | 1 cut(s) | 165 |
| AciI | CCGC | 1 cut(s) | 165 |
| AclWI | GGATC | 1 cut(s) | 382 |
| AcsI | RAATTY | 1 cut(s) | 41 |
| AcuI | CTGAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 346, 398 |
| AluBI | AGCT | 2 cut(s) | 75, 109 |
| AluI | AGCT | 2 cut(s) | 75, 109 |
| Alw26I | GTCTC | 1 cut(s) | 25 |
| AlwI | GGATC | 1 cut(s) | 382 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 78 |
| ApeKI | GCWGC | 2 cut(s) | 35, 72 |
| ApoI | RAATTY | 1 cut(s) | 41 |
| AseI | ATTAAT | 1 cut(s) | 188 |
| AspLEI | GCGC | 1 cut(s) | 165 |
| AspS9I | GGNCC | 1 cut(s) | 15 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| AvaII | GGWCC | 1 cut(s) | 15 |
| BaeGI | GKGCMC | 1 cut(s) | 315 |
| BbvI | GCAGC | 2 cut(s) | 22, 84 |
| BccI | CCATC | 1 cut(s) | 35 |
| BcoDI | GTCTC | 1 cut(s) | 25 |
| BfaI | CTAG | 1 cut(s) | 320 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfuAI | ACCTGC | 1 cut(s) | 381 |
| BisI | GCNGC | 3 cut(s) | 36, 73, 166 |
| BlsI | GCNGC | 3 cut(s) | 37, 74, 167 |
| Bme18I | GGWCC | 1 cut(s) | 15 |
| BmgT120I | GGNCC | 1 cut(s) | 15 |
| BoxI | GACNNNNGTC | 1 cut(s) | 29 |
| Bpu10I | CCTNAGC | 1 cut(s) | 110 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 1 cut(s) | 369 |
| Bse1I | ACTGG | 1 cut(s) | 391 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| BseDI | CCNNGG | 1 cut(s) | 369 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 1 cut(s) | 124 |
| BseNI | ACTGG | 1 cut(s) | 391 |
| BseSI | GKGCMC | 1 cut(s) | 315 |
| BseXI | GCAGC | 2 cut(s) | 22, 84 |
| BsgI | GTGCAG | 1 cut(s) | 91 |
| Bsh1236I | CGCG | 1 cut(s) | 165 |
| BsmAI | GTCTC | 1 cut(s) | 25 |
| BsmBI | CGTCTC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 1 cut(s) | 315 |
| Bsp143I | GATC | 1 cut(s) | 374 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspCNI | CTCAG | 1 cut(s) | 123 |
| BspFNI | CGCG | 1 cut(s) | 165 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BspMI | ACCTGC | 1 cut(s) | 381 |
| BspPI | GGATC | 1 cut(s) | 382 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BsrI | ACTGG | 1 cut(s) | 391 |
| BssECI | CCNNGG | 1 cut(s) | 369 |
| BssMI | GATC | 1 cut(s) | 374 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst4CI | ACNGT | 1 cut(s) | 326 |
| BstDEI | CTNAG | 1 cut(s) | 110 |
| BstFNI | CGCG | 1 cut(s) | 165 |
| BstHHI | GCGC | 1 cut(s) | 165 |
| BstKTI | GATC | 1 cut(s) | 377 |
| BstMAI | GTCTC | 1 cut(s) | 25 |
| BstMBI | GATC | 1 cut(s) | 374 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 355, 364 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 29 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstSLI | GKGCMC | 1 cut(s) | 315 |
| BstUI | CGCG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 2 cut(s) | 22, 84 |
| BstX2I | RGATCY | 1 cut(s) | 374 |
| BstYI | RGATCY | 1 cut(s) | 374 |
| BtsIMutI | CAGTG | 1 cut(s) | 331 |
| BveI | ACCTGC | 1 cut(s) | 381 |
| CaiI | CAGNNNCTG | 1 cut(s) | 78 |
| CfoI | GCGC | 1 cut(s) | 165 |
| Cfr13I | GGNCC | 1 cut(s) | 15 |
| CviAII | CATG | 1 cut(s) | 302 |
| CviJI | RGCY | 6 cut(s) | 75, 109, 200, 276, 358, 367 |
| CviKI_1 | RGCY | 6 cut(s) | 75, 109, 200, 276, 358, 367 |
| DdeI | CTNAG | 1 cut(s) | 110 |
| DpnI | GATC | 1 cut(s) | 376 |
| DpnII | GATC | 1 cut(s) | 374 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| Esp3I | CGTCTC | 1 cut(s) | 25 |
| FaeI | CATG | 1 cut(s) | 305 |
| FaiI | YATR | 5 cut(s) | 8, 284, 303, 362, 408 |
| FatI | CATG | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 73, 166 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 73, 166 |
| FspBI | CTAG | 1 cut(s) | 320 |
| GlaI | GCGC | 1 cut(s) | 164 |
| GluI | GCNGC | 3 cut(s) | 36, 73, 166 |
| HhaI | GCGC | 1 cut(s) | 165 |
| Hin1II | CATG | 1 cut(s) | 305 |
| Hin6I | GCGC | 1 cut(s) | 163 |
| HinP1I | GCGC | 1 cut(s) | 163 |
| HinfI | GANTC | 1 cut(s) | 286 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy188I | TCNGA | 1 cut(s) | 207 |
| Hpy188III | TCNNGA | 4 cut(s) | 22, 112, 230, 320 |
| Hpy99I | CGWCG | 1 cut(s) | 35 |
| HpyAV | CCTTC | 1 cut(s) | 105 |
| HpyCH4III | ACNGT | 1 cut(s) | 326 |
| HpyCH4V | TGCA | 5 cut(s) | 6, 72, 135, 242, 294 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 355, 364 |
| HpyF3I | CTNAG | 1 cut(s) | 110 |
| Hsp92II | CATG | 1 cut(s) | 305 |
| HspAI | GCGC | 1 cut(s) | 163 |
| Kzo9I | GATC | 1 cut(s) | 374 |
| LpnPI | CCDG | 7 cut(s) | 64, 97, 135, 286, 363, 372, 376 |
| Lsp1109I | GCAGC | 2 cut(s) | 22, 84 |
| MaeI | CTAG | 1 cut(s) | 320 |
| MalI | GATC | 1 cut(s) | 376 |
| MboI | GATC | 1 cut(s) | 374 |
| MboII | GAAGA | 1 cut(s) | 95 |
| MflI | RGATCY | 1 cut(s) | 374 |
| MhlI | GDGCHC | 1 cut(s) | 315 |
| MluCI | AATT | 5 cut(s) | 41, 140, 185, 233, 412 |
| MmeI | TCCRAC | 1 cut(s) | 34 |
| MnlI | CCTC | 1 cut(s) | 287 |
| MseI | TTAA | 2 cut(s) | 188, 354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MvnI | CGCG | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 355, 364 |
| NdeII | GATC | 1 cut(s) | 374 |
| NlaIII | CATG | 1 cut(s) | 305 |
| PfeI | GAWTC | 1 cut(s) | 286 |
| PkrI | GCNGC | 3 cut(s) | 37, 74, 167 |
| PshAI | GACNNNNGTC | 1 cut(s) | 29 |
| PshBI | ATTAAT | 1 cut(s) | 188 |
| PspPI | GGNCC | 1 cut(s) | 15 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 78 |
| PsuI | RGATCY | 1 cut(s) | 374 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SaqAI | TTAA | 2 cut(s) | 188, 354 |
| SatI | GCNGC | 3 cut(s) | 36, 73, 166 |
| Sau3AI | GATC | 1 cut(s) | 374 |
| Sau96I | GGNCC | 1 cut(s) | 15 |
| SduI | GDGCHC | 1 cut(s) | 315 |
| SetI | ASST | 3 cut(s) | 77, 111, 395 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SinI | GGWCC | 1 cut(s) | 15 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 1 cut(s) | 158 |
| SmoI | CTYRAG | 1 cut(s) | 158 |
| Sse9I | AATT | 5 cut(s) | 41, 140, 185, 233, 412 |
| SsiI | CCGC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 320 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 1 cut(s) | 326 |
| TaqI | TCGA | 1 cut(s) | 23 |
| TasI | AATT | 5 cut(s) | 41, 140, 185, 233, 412 |
| TauI | GCSGC | 1 cut(s) | 168 |
| TfiI | GAWTC | 1 cut(s) | 286 |
| Tru1I | TTAA | 2 cut(s) | 188, 354 |
| Tru9I | TTAA | 2 cut(s) | 188, 354 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseI | GCWGC | 2 cut(s) | 35, 72 |
| TspDTI | ATGAA | 1 cut(s) | 278 |
| TspGWI | ACGGA | 1 cut(s) | 7 |
| TspRI | CASTG | 1 cut(s) | 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 15 |
| VspI | ATTAAT | 1 cut(s) | 188 |
| XapI | RAATTY | 1 cut(s) | 41 |
| XbaI | TCTAGA | 1 cut(s) | 319 |
| XspI | CTAG | 1 cut(s) | 320 |