Rh4AG231200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0022214
Physical Location & Seq
Reverse (-)
53414392 .. 53419343
4952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG231200.1

Sequence Viewer

Length: 855 bp
ATGGGTGGGTGCTTTCCTTGCTTTGGATCATCCAACAAGGAGGCTAGTGTTGGTGCTGCTGTGAAGGAAGTTAGCAAGAAGGAATCAGTTAAAGAAGGCTCAGCTACTCAGTCTCACCATGTTACCAGAGTTGGCTCAGATAAATCAAAATCTCGGAATGGTTCTGATCCTAAGAAGGAACCACCTATTCCAAAAGATATTACTGAAGTAGATGGGAATGCTGATGCACGACCACTTTTTAAAGATCGTAGGAAGTTCCCAAAAATGGCTGATCCACTACTACAGGGCCGTTATCCAATGCGGGGGCTTTACCAAGCTCTTGCTGTTGCAGCCATGTGCTTGCAGGAGCAAGCGGCTACAAGGCCTTTAATAGGAGATGTAGTGACTGCTCTTACATATTTGGCTTCTCAAACCTATGATCCAAATGCAGCTAGTGGTCACAGTAACAGAGTTGGTCCATCTACTCCTAGGCACAAGGACGATCGAAGGAACATGGGAGATGGGCTGGATAGCCCAGATGAGCCTGGACGAGGTGGACGGCATGGTAGCCATTCATACAGAAACTCACCTGATTTCAGAAGGAAAGATCCCAATAGGGACTTGGGTGCTGGTGTAGAATTAGGAAGGATTGAAACCGGTAACGGCTCTGGGAGGAAATGGGGTCTAGATGGGTTAGAGCAACAAGATTCTCAGAGGGACAGCCCTGTAAGTGCTGGGAGAGCAAGGGAAACTCTGCGAAATCGTGATCTAGATAGAGAACGTGCGGTGGCTGAGGCGAAGGTTTGGGGCGAAAACTGGAGAGAAAAGAAAAGAGCAAATGTGATGGGTGGTAGCTTTGATGGTACAAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000187 GO:0001932 GO:0001934 GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009814 GO:0009816 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0032101 GO:0032103 GO:0032147 GO:0032268 GO:0032270 GO:0033674 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0043902 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045859 GO:0045860 GO:0045937 GO:0046658 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0098542 GO:0140096 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

30.97

Weight (kDa)

9.4

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022214)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g17410
pyrus_communis pycom13g14800
rosa_samantha Rh4AG231200 Rh4CG245600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 301, 353, 764
AclWI GGATC 5 cut(s) 34, 161, 266, 413, 581
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 5 cut(s) 23, 265, 302, 371, 530
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 1 cut(s) 632
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 4 cut(s) 104, 317, 431, 834
AluI AGCT 4 cut(s) 104, 317, 431, 834
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 5 cut(s) 34, 161, 266, 413, 581
AoxI GGCC 2 cut(s) 286, 362
ApeKI GCWGC 3 cut(s) 56, 329, 428
AsiGI ACCGGT 1 cut(s) 635
AspA2I CCTAGG 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 286, 455
AsuHPI GGTGA 2 cut(s) 107, 558
AvaII GGWCC 1 cut(s) 455
AvrII CCTAGG 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 43, 341, 440
BccI CCATC 6 cut(s) 206, 466, 494, 662, 817, 833
BceAI ACGGC 3 cut(s) 273, 554, 658
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 5 cut(s) 45, 432, 468, 665, 749
BfmI CTRYAG 1 cut(s) 281
BisI GCNGC 4 cut(s) 57, 330, 354, 429
BlnI CCTAGG 1 cut(s) 467
BlpI GCTNAGC 1 cut(s) 100
BlsI GCNGC 4 cut(s) 58, 331, 355, 430
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 2 cut(s) 286, 455
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 817
Bpu10I CCTNAGC 1 cut(s) 771
Bpu1102I GCTNAGC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 467
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 265, 302, 371, 530
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 800
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 5 cut(s) 23, 265, 302, 371, 530
BseMII CTCAG 5 cut(s) 114, 122, 150, 704, 762
BseNI ACTGG 1 cut(s) 800
BseXI GCAGC 3 cut(s) 43, 341, 440
BseYI CCCAGC 1 cut(s) 713
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 288, 364
BshTI ACCGGT 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 2 cut(s) 611, 710
BslI CCNNNNNNNGG 5 cut(s) 23, 265, 302, 371, 530
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 611, 710
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 288, 364
Bsp143I GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
Bsp1720I GCTNAGC 1 cut(s) 100
BspACI CCGC 3 cut(s) 301, 353, 764
BspANI GGCC 2 cut(s) 288, 364
BspCNI CTCAG 5 cut(s) 113, 121, 149, 703, 763
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 5 cut(s) 34, 161, 266, 413, 581
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 1 cut(s) 800
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 341, 351
BstDEI CTNAG 6 cut(s) 100, 108, 136, 171, 690, 771
BstENI CCTNNNNNAGG 2 cut(s) 369, 528
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 8 cut(s) 29, 169, 247, 274, 421, 484, 589, 748
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 3 cut(s) 18, 329, 719
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 43, 341, 440
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 2 cut(s) 288, 364
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 341, 351
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 286, 455
Csp6I GTAC 1 cut(s) 843
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 4 cut(s) 119, 334, 493, 542
CviQI GTAC 1 cut(s) 843
DdeI CTNAG 6 cut(s) 100, 108, 136, 171, 690, 771
DpnI GATC 8 cut(s) 28, 168, 246, 273, 420, 483, 588, 747
DpnII GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
DraI TTTAAA 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 467
Eco147I AGGCCT 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 225
EcoNI CCTNNNNNAGG 2 cut(s) 369, 528
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 4 cut(s) 122, 337, 496, 545
FaiI YATR 7 cut(s) 120, 335, 397, 417, 494, 543, 556
FaqI GGGAC 2 cut(s) 611, 710
FatI CATG 4 cut(s) 118, 333, 492, 541
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 57, 330, 354, 429
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 4 cut(s) 57, 330, 354, 429
FspBI CTAG 5 cut(s) 45, 432, 468, 665, 749
GluI GCNGC 4 cut(s) 57, 330, 354, 429
GsaI CCCAGC 1 cut(s) 717
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 2 cut(s) 288, 364
HapII CCGG 1 cut(s) 636
Hin1II CATG 4 cut(s) 122, 337, 496, 545
HinfI GANTC 2 cut(s) 83, 686
HpaII CCGG 1 cut(s) 636
HphI GGTGA 2 cut(s) 107, 558
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 5 cut(s) 139, 156, 166, 578, 693
Hpy188III TCNNGA 3 cut(s) 665, 743, 749
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 8 cut(s) 58, 73, 89, 169, 480, 573, 618, 772
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 4 cut(s) 227, 329, 343, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 329, 719
HpyF3I CTNAG 6 cut(s) 100, 108, 136, 171, 690, 771
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 4 cut(s) 122, 337, 496, 545
Kzo9I GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 43, 341, 440
LweI GCATC 1 cut(s) 214
MaeI CTAG 5 cut(s) 45, 432, 468, 665, 749
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 5 cut(s) 121, 382, 437, 443, 638
MalI GATC 8 cut(s) 28, 168, 246, 273, 420, 483, 588, 747
MboI GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
MflI RGATCY 1 cut(s) 586
MluCI AATT 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 34, 524, 645, 687, 766
MseI TTAA 3 cut(s) 90, 240, 368
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 18, 329, 719
NdeII GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
NlaIII CATG 4 cut(s) 122, 337, 496, 545
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 382, 437
PceI AGGCCT 1 cut(s) 364
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 83, 686
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 4 cut(s) 58, 331, 355, 430
Ple19I CGATCG 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 286, 455
PsuI RGATCY 1 cut(s) 586
PvuI CGATCG 1 cut(s) 484
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
SaqAI TTAA 3 cut(s) 90, 240, 368
SatI GCNGC 4 cut(s) 57, 330, 354, 429
Sau3AI GATC 8 cut(s) 26, 166, 244, 271, 418, 481, 586, 745
Sau96I GGNCC 2 cut(s) 286, 455
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 281
SinI GGWCC 1 cut(s) 455
Sse9I AATT 1 cut(s) 617
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 3 cut(s) 301, 353, 764
SspMI CTAG 5 cut(s) 45, 432, 468, 665, 749
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 763
TaqI TCGA 1 cut(s) 484
TasI AATT 1 cut(s) 617
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 2 cut(s) 83, 686
Tru1I TTAA 3 cut(s) 90, 240, 368
Tru9I TTAA 3 cut(s) 90, 240, 368
TseFI GTSAC 2 cut(s) 382, 437
TseI GCWGC 3 cut(s) 56, 329, 428
Tsp45I GTSAC 2 cut(s) 382, 437
TspDTI ATGAA 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 2 cut(s) 369, 528
XbaI TCTAGA 2 cut(s) 664, 748
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 5 cut(s) 45, 432, 468, 665, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.