Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0032695

Physical Location & Seq

Genomic Coordinates Forward (+)

67782526 .. 67782849

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACCAATCACAGCCCCTGTGACGCTACAAAACGACAAATTCCCCCAACCATAAAAGGAGGAGCCCTCTCCGTTCAAACATTTCAAACACTTCATTTCTCTAAAACCCTAACTATCAGTAGGTTTGATCCAGCTTTGTTGCCGACCACAACAATGGAGGCCAATAATGGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTATTACCTCAAAAACCAAGCCATTTCAAAGCCGTGCCCTGTTTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCTTGGCAATTGCCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

107

Amino Acids

11.89

Weight (kDa)

6.81

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	61 - 106	4.5e-17	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0032695)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG369600 Rh4CG396100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	122, 296
AcsI	RAATTY	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	77, 86, 252
AjnI	CCWGG	2 cut(s)	184, 316
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	2 cut(s)	122, 296
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	67
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	186, 318
Bme1390I	CCNGG	2 cut(s)	186, 318
BmiI	GGNNCC	2 cut(s)	64, 197
BmrFI	CCNGG	2 cut(s)	186, 318
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BsaJI	CCNNGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	186, 318
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	67, 263
Bsp143I	GATC	2 cut(s)	127, 301
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	64, 197
BspPI	GGATC	2 cut(s)	122, 296
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	2 cut(s)	127, 301
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	186, 318
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	2 cut(s)	130, 304
BstMBI	GATC	2 cut(s)	127, 301
BstNI	CCWGG	2 cut(s)	186, 318
BstSCI	CCNGG	2 cut(s)	184, 316
BstSLI	GKGCMC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	18
CseI	GACGC	1 cut(s)	32
CviJI	RGCY	7 cut(s)	15, 65, 134, 161, 171, 245, 256
CviKI_1	RGCY	7 cut(s)	15, 65, 134, 161, 171, 245, 256
DpnI	GATC	2 cut(s)	129, 303
DpnII	GATC	2 cut(s)	127, 301
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	184, 316
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	305
FaiI	YATR	1 cut(s)	53
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	127, 301
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	8 cut(s)	31, 144, 159, 171, 198, 276, 291, 303
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	129, 303
MboI	GATC	2 cut(s)	127, 301
MfeI	CAATTG	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	67, 263
MluCI	AATT	2 cut(s)	39, 311
MnlI	CCTC	6 cut(s)	53, 77, 151, 192, 205, 242
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	186, 318
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	2 cut(s)	186, 318
NdeII	GATC	2 cut(s)	127, 301
NlaIV	GGNNCC	2 cut(s)	64, 197
NmuCI	GTSAC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	184, 316
PspGI	CCWGG	2 cut(s)	184, 316
PspN4I	GGNNCC	2 cut(s)	64, 197
PstNI	CAGNNNCTG	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	127, 301
ScrFI	CCNGG	2 cut(s)	186, 318
SduI	GDGCHC	2 cut(s)	67, 263
SetI	ASST	4 cut(s)	125, 136, 197, 234
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	39, 311
StyD4I	CCNGG	2 cut(s)	184, 316
StyI	CCWWGG	1 cut(s)	305
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	39, 311
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	61
XapI	RAATTY	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.