Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0032695

Physical Location & Seq

Genomic Coordinates Forward (+)

64602652 .. 64602990

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG396100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACCAATCACAGCCCCTGTGACGCTACAAAACGACGAATTCCCCCAACCATAAAAGGAGGAGCCCTCTCCGTTCAAACATTTCAAACACTTCATTTCTCTAAAACCCTAACTATCTGTTTAGCTTCTAGCAGTAGGTTTGATCCAGCTTTTTTGCAGACCACAACAATGGAGGCCAATAATGGCTCTGGACTTCCTCCTGGTTTTAGGTTCCACCCAACTGATGAGGAACTCATTGTGTATTACCTCAAAAACCAAGCCATTTCAAAGCCGTGCCCTGTTTCCATCATCCCAGAAGTCGATATCTACAAGTTTGATCCTTGGCAATTGCCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

112

Amino Acids

12.44

Weight (kDa)

7.74

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	66 - 111	5e-17	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0032695)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG369600 Rh4CG396100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	137, 311
AcsI	RAATTY	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	77, 86, 267
AjnI	CCWGG	2 cut(s)	199, 331
AluBI	AGCT	2 cut(s)	125, 149
AluI	AGCT	2 cut(s)	125, 149
AlwI	GGATC	2 cut(s)	137, 311
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	67
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	2 cut(s)	201, 333
BfaI	CTAG	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	201, 333
BmiI	GGNNCC	2 cut(s)	64, 212
BmrFI	CCNGG	2 cut(s)	201, 333
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BsaJI	CCNNGG	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	201, 333
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	67, 278
Bsp143I	GATC	2 cut(s)	142, 316
BspANI	GGCC	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	64, 212
BspPI	GGATC	2 cut(s)	137, 311
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	142, 316
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	201, 333
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	145, 319
BstMBI	GATC	2 cut(s)	142, 316
BstNI	CCWGG	2 cut(s)	201, 333
BstSCI	CCNGG	2 cut(s)	199, 331
BstSLI	GKGCMC	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	18
CseI	GACGC	1 cut(s)	32
CviJI	RGCY	8 cut(s)	15, 65, 125, 149, 176, 186, 260, 271
CviKI_1	RGCY	8 cut(s)	15, 65, 125, 149, 176, 186, 260, 271
DpnI	GATC	2 cut(s)	144, 318
DpnII	GATC	2 cut(s)	142, 316
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	199, 331
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	320
FaiI	YATR	1 cut(s)	53
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	142, 316
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	8 cut(s)	31, 159, 174, 186, 213, 291, 306, 318
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	144, 318
MboI	GATC	2 cut(s)	142, 316
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	67, 278
MluCI	AATT	2 cut(s)	39, 326
MnlI	CCTC	6 cut(s)	53, 77, 166, 207, 220, 257
MslI	CAYNNNNRTG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	201, 333
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	201, 333
NdeII	GATC	2 cut(s)	142, 316
NlaIV	GGNNCC	2 cut(s)	64, 212
NmuCI	GTSAC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	199, 331
PspGI	CCWGG	2 cut(s)	199, 331
PspN4I	GGNNCC	2 cut(s)	64, 212
PstNI	CAGNNNCTG	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	142, 316
ScrFI	CCNGG	2 cut(s)	201, 333
SduI	GDGCHC	2 cut(s)	67, 278
SetI	ASST	5 cut(s)	127, 140, 151, 212, 249
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	39, 326
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	199, 331
StyI	CCWWGG	1 cut(s)	320
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	39, 326
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	61
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.