Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0026094

Physical Location & Seq

Genomic Coordinates Forward (+)

67783414 .. 67783734

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGCATTTTACAGCTGCTAATGATGTCAAAGAGGAACAAGTGCTGAACTTCCCAAGGACATTTTCCCTTACTAGCCTTTTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGACAATCCAACTTATGATTTCCACAACATGCTGGCCAATAATGCAGGACTAAATGGCCAGACGTTTCAGTTTGGTGATCAAATCCCATACCAAAGCGCAGACTCGGCGAGATTCCAAGTGATGAATCATAGTGGCACCTTTAACCAACCATTATTTGTGAATCCGGCGTACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

106

Amino Acids

11.99

Weight (kDa)

4.54

Isoelectric Point (pI)

23.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0026094)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG369700 Rh4CG396200 Rh4DG376100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	156, 178
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	121, 313
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	2 cut(s)	17, 115
AluI	AGCT	2 cut(s)	17, 115
AoxI	GGCC	2 cut(s)	156, 178
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	101
BalI	TGGCCA	2 cut(s)	158, 180
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	199
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	102, 259
BsaJI	CCNNGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	158, 180
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	158, 180
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	2 cut(s)	158, 180
BspLI	GGNNCC	2 cut(s)	102, 259
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 227
BstNSI	RCATGY	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	158, 180
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	88, 151, 301
CviJI	RGCY	5 cut(s)	17, 78, 115, 158, 180
CviKI_1	RGCY	5 cut(s)	17, 78, 115, 158, 180
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	156, 178
Eco130I	CCWWGG	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	91, 154, 304
FaiI	YATR	6 cut(s)	89, 138, 152, 211, 252, 302
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	87, 150, 300
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	158, 180
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	91, 154, 304
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	4 cut(s)	224, 234, 247, 283
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 227
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	91, 154, 304
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	125, 140, 153, 194, 300
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MlsI	TGGCCA	2 cut(s)	158, 180
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	2 cut(s)	158, 180
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	28
Mox20I	TGGCCA	2 cut(s)	158, 180
MscI	TGGCCA	2 cut(s)	158, 180
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	2 cut(s)	158, 180
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	164, 227
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	91, 154, 304
NlaIV	GGNNCC	2 cut(s)	102, 259
NmeAIII	GCCGAG	1 cut(s)	206
NspI	RCATGY	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	234, 247, 283
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	102, 259
PspPI	GGNCC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	218
SetI	ASST	4 cut(s)	19, 117, 188, 263
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	56
TaiI	ACGT	1 cut(s)	188
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	234, 247, 283
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	260, 317
VpaK11BI	GGWCC	1 cut(s)	101
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.