Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0026094

Physical Location & Seq

Genomic Coordinates Forward (+)

59421042 .. 59427461

Gene Structure 6420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG376100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGTAAGTCACCAAAGGAGAGGATTGAAGGGCCAAACAAAACATTATGGCCTTCGAAACAAAACATTATGGTCTTCGATGTGTTTGATACGAGTGCTACATACTATTTGGACGATTGGGTCCTGTGTAGGATCTATAAGAAGAGGCATGTCAACAAGGCTTACTTGGATGATCCAAAACTTGAAGATTCAAGTCCCCAAATGGAGCATTTTACAGCTGCTAATGATGTCAAAGAGGAACAAGTGCTGAACTTCCCAAGGACATTTTCCCTTACTAGCCTTTTGGACATGGATTACTTGGGACCAATTTCCCAGCTTTTGAATGACAATCCAACTTATGATTTCCACAACATGCTGGCCAATAATGCAGGACTAAATGGCCAGACGTTTCAGTTTGGTGATCAAATCCCATACCAAAGCGCAGACTCGGCGAGATTCCAAGTGATGAATCATAGTGGCACCTTTAACCAACCATTATTTGTGAATCCGGCGTACAACAACATGAATGGTTTGAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

173

Amino Acids

19.88

Weight (kDa)

5.22

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026094)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG369700 Rh4CG396200 Rh4DG376100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	458
AclWI	GGATC	2 cut(s)	140, 167
AcoI	YGGCCR	2 cut(s)	357, 379
AfaI	GTAC	1 cut(s)	494
AgsI	TTSAA	5 cut(s)	29, 185, 192, 322, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	2 cut(s)	218, 316
AluI	AGCT	2 cut(s)	218, 316
AlwI	GGATC	2 cut(s)	140, 167
AoxI	GGCC	4 cut(s)	32, 50, 357, 379
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	32, 121, 302
AsuHPI	GGTGA	2 cut(s)	3, 410
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	121, 302
BalI	TGGCCA	2 cut(s)	359, 381
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	2 cut(s)	121, 302
BmgT120I	GGNCC	3 cut(s)	32, 121, 302
BmiI	GGNNCC	3 cut(s)	122, 303, 460
BpiI	GAAGAC	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	4 cut(s)	34, 52, 359, 381
BshNI	GGYRCC	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	180, 315
BsmFI	GGGAC	2 cut(s)	180, 315
BsnI	GGCC	4 cut(s)	34, 52, 359, 381
Bsp119I	TTCGAA	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	132, 172, 400
BspANI	GGCC	4 cut(s)	34, 52, 359, 381
BspLI	GGNNCC	3 cut(s)	122, 303, 460
BspPI	GGATC	2 cut(s)	140, 167
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	132, 172, 400
BssT1I	CCWWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	135, 175, 403
BstMBI	GATC	3 cut(s)	132, 172, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 428
BstNSI	RCATGY	2 cut(s)	152, 355
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	34, 52, 359, 381
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	32, 121, 302
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	4 cut(s)	149, 289, 352, 502
CviJI	RGCY	8 cut(s)	34, 52, 161, 218, 279, 316, 359, 381
CviKI_1	RGCY	8 cut(s)	34, 52, 161, 218, 279, 316, 359, 381
CviQI	GTAC	1 cut(s)	493
DpnI	GATC	3 cut(s)	134, 174, 402
DpnII	GATC	3 cut(s)	132, 172, 400
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	357, 379
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	121, 302
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	4 cut(s)	152, 292, 355, 505
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	2 cut(s)	180, 315
FatI	CATG	4 cut(s)	148, 288, 351, 501
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	4 cut(s)	34, 52, 359, 381
HapII	CCGG	1 cut(s)	488
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	152, 292, 355, 505
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	5 cut(s)	188, 425, 435, 448, 484
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	3, 410
Hpy166II	GTNNAC	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	23, 63
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 428
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	4 cut(s)	152, 292, 355, 505
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	132, 172, 400
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	137, 326, 341, 354, 395, 501
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	3 cut(s)	134, 174, 402
MboI	GATC	3 cut(s)	132, 172, 400
MboII	GAAGA	3 cut(s)	67, 154, 197
MflI	RGATCY	1 cut(s)	132
MlsI	TGGCCA	2 cut(s)	359, 381
MluCI	AATT	1 cut(s)	306
MluNI	TGGCCA	2 cut(s)	359, 381
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	3 cut(s)	15, 138, 229
Mox20I	TGGCCA	2 cut(s)	359, 381
MscI	TGGCCA	2 cut(s)	359, 381
MseI	TTAA	1 cut(s)	465
Msp20I	TGGCCA	2 cut(s)	359, 381
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	2 cut(s)	365, 428
NdeII	GATC	3 cut(s)	132, 172, 400
NlaIII	CATG	4 cut(s)	152, 292, 355, 505
NlaIV	GGNNCC	3 cut(s)	122, 303, 460
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	2 cut(s)	152, 355
NspV	TTCGAA	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	188, 435, 448, 484
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	122, 303, 460
PspPI	GGNCC	3 cut(s)	32, 121, 302
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	132, 172, 400
Sau96I	GGNCC	3 cut(s)	32, 121, 302
SchI	GAGTC	1 cut(s)	419
SetI	ASST	4 cut(s)	220, 318, 389, 464
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	2 cut(s)	121, 302
Sse9I	AATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	56, 78
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	4 cut(s)	188, 435, 448, 484
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	461, 518
VpaK11BI	GGWCC	2 cut(s)	121, 302
XceI	RCATGY	2 cut(s)	152, 355
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.