Rh4BG019000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
2952865 .. 2953623
759 bp
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UTR
Exon/CDS
Intron
Rh4BG019000.1

Sequence Viewer

Length: 168 bp
ATGGAAAAAAGAGCATTTGGAATAGCAGATGACGTACATGAAGCAGGTCTTTTCTTCGCATACTTGGCATTTGCTCCATTTTGTGAAGCAGGCACAATGGATGGCCTTTCGTTGCAAAGGCTTTTGGAGAGCACTTCCCAAATTGATATTGGAGCGACAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.01

Weight (kDa)

4.5

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025936)

Species Orthologous Gene IDs
rosa_rugosa Rorug03G0321300
rosa_samantha Rh4BG019000 Rh4DG019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AfaI GTAC 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 134
AoxI GGCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 134
BccI CCATC 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 35
BseGI GGATG 1 cut(s) 106
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 134
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 134
BspANI GGCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 105, 121
CviKI_1 RGCY 2 cut(s) 105, 121
CviQI GTAC 1 cut(s) 35
FaeI CATG 1 cut(s) 41
FaiI YATR 2 cut(s) 39, 61
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 1 cut(s) 37
FokI GGATG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 2 cut(s) 79, 152
LpnPI CCDG 2 cut(s) 30, 75
MaeII ACGT 1 cut(s) 33
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 41
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 134
SetI ASST 2 cut(s) 36, 49
SgeI CNNG 4 cut(s) 50, 57, 76, 102
Sse9I AATT 1 cut(s) 141
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.