Rh4DG019500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
3004710 .. 3007444
2735 bp
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UTR
Exon/CDS
Intron
Rh4DG019500.1

Sequence Viewer

Length: 219 bp
ATGGATAAAAGAGCATTTGGAATAGCAGATGACGTATATGAAGCAGGTCTTTTCTTTGCATACTCAGTATTTGTTCCATTTTGTGAAGCAGGCACAATGGATGGCCTTTCATTGCAAAGGCTTTTGGAGAGCACTTCCCAAATTGATATTGGAGCAACAAGAGAAAAGGGATGTCTGGCTCCACATGATTTCATTCCACAACAAAATCGGGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

4.6

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025936)

Species Orthologous Gene IDs
rosa_rugosa Rorug03G0321300
rosa_samantha Rh4BG019000 Rh4DG019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 134
AoxI GGCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 134
BccI CCATC 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 110
BseGI GGATG 2 cut(s) 106, 176
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 134
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 134
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 2 cut(s) 106, 176
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 106, 176
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 91
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 105, 121, 179
CviKI_1 RGCY 3 cut(s) 105, 121, 179
DdeI CTNAG 1 cut(s) 64
FaeI CATG 1 cut(s) 188
FaiI YATR 4 cut(s) 37, 39, 61, 186
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 1 cut(s) 184
FokI GGATG 2 cut(s) 113, 183
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 59, 115
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 188
LmnI GCTCC 2 cut(s) 152, 184
LpnPI CCDG 3 cut(s) 30, 75, 161
MaeII ACGT 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 141
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 180
SduI GDGCHC 1 cut(s) 134
SetI ASST 2 cut(s) 36, 49
SgeI CNNG 5 cut(s) 57, 102, 171, 188, 197
Sse9I AATT 1 cut(s) 141
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 54, 99, 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.