Rh4BG089400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019550
Physical Location & Seq
Reverse (-)
15387645 .. 15409952
22308 bp
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UTR
Exon/CDS
Intron
Rh4BG089400.1

Sequence Viewer

Length: 249 bp
ATGGAGCTGAATAGGGTTGGGTCGAGGCTCAGACATCCTGCGATCACCTACCTTCTCTCTCCTCCGATCTCGTTCACATTCCCACCTCAGATACTCACTGCAATAGGTCACTTTCTTCTCAAAATCGAAATAGCCGCCTCTGTTGTAGATAGTGACAATCCAATTGGTCATATAATTTTCACAACCATAGGAGGCAAAAATGGAGAGCCCAAACAGGTTCTTTTACCTTGCAGACCATTAGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

82

Amino Acids

8.95

Weight (kDa)

9.1

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019550)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0405291
rosa_rugosa Rorug05G0268700
rosa_samantha Rh4AG130500 Rh4BG089400 Rh4CG332300 Rh4CG445300 Rh6BG470500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 37
BanII GRGCYC 1 cut(s) 210
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 43, 101
BseRI GAGGAG 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 42, 66
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 42, 100
BssMI GATC 2 cut(s) 42, 66
BstDEI CTNAG 2 cut(s) 29, 87
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 45, 69
BstMBI GATC 2 cut(s) 42, 66
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
CviJI RGCY 4 cut(s) 7, 28, 134, 208
CviKI_1 RGCY 4 cut(s) 7, 28, 134, 208
DdeI CTNAG 2 cut(s) 29, 87
DpnI GATC 2 cut(s) 44, 68
DpnII GATC 2 cut(s) 42, 66
Eco24I GRGCYC 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 210
FaiI YATR 5 cut(s) 171, 173, 188, 245, 247
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 32, 66, 90
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 101, 231
HpyF3I CTNAG 2 cut(s) 29, 87
Kzo9I GATC 2 cut(s) 42, 66
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 51, 200
MaeIII GTNAC 2 cut(s) 107, 152
MalI GATC 2 cut(s) 44, 68
MboI GATC 2 cut(s) 42, 66
MboII GAAGA 1 cut(s) 107
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 162, 174
MnlI CCTC 5 cut(s) 18, 72, 96, 148, 185
MunI CAATTG 1 cut(s) 162
NdeII GATC 2 cut(s) 42, 66
NmuCI GTSAC 2 cut(s) 107, 152
PkrI GCNGC 1 cut(s) 136
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 42, 66
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 9, 50, 54, 88, 109, 219, 229
SgeI CNNG 5 cut(s) 36, 50, 82, 227, 240
Sse9I AATT 2 cut(s) 162, 174
SsiI CCGC 1 cut(s) 135
TaqI TCGA 2 cut(s) 23, 126
TasI AATT 2 cut(s) 162, 174
TauI GCSGC 1 cut(s) 137
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 107, 152
Tsp45I GTSAC 2 cut(s) 107, 152
TspRI CASTG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.