Rh4BG098400
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0034180
Physical Location & Seq
Reverse (-)
16862706 .. 16862996
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG098400.1

Sequence Viewer

Length: 291 bp
ATGAGTCATGACCAATATTATGAGCAGCATTTCAACATGAACCATCATCAAGTGCCAGTGTTGAAAAACGTAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCTGTGGTGTCGTCACCACCTAATACTACTCATGATCATCACCAGTTTCCAGAATTGTCTCATCATCATCATGGAGGACTGTGGAGCAGAAAGTTGTGGCCAAGGAGGAAACTGATGTACAAGAAGAAAGAGGAATATGGGGCGCCGGATCAAATTAAAGAAGGTTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

96

Amino Acids

11.2

Weight (kDa)

8.97

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034180)

Species Orthologous Gene IDs
rosa_samantha Rh4BG098400 Rh4DG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 3 cut(s) 34, 64, 95
AluBI AGCT 2 cut(s) 98, 112
AluI AGCT 2 cut(s) 98, 112
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 123, 149
BalI TGGCCA 1 cut(s) 217
BanI GGYRCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 51
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 56, 160
BseDI CCNNGG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 56, 160
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 151, 265
BspANI GGCC 1 cut(s) 217
BspHI TCATGA 2 cut(s) 7, 148
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 56, 160
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 151, 265
BssNI GRCGYC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 260
BstAUI TGTACA 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 154, 268
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 151, 265
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 63
CciI TCATGA 2 cut(s) 7, 148
CfoI GCGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 235
CviAII CATG 5 cut(s) 8, 37, 82, 149, 188
CviJI RGCY 4 cut(s) 90, 98, 112, 217
CviKI_1 RGCY 4 cut(s) 90, 98, 112, 217
CviQI GTAC 1 cut(s) 235
DinI GGCGCC 1 cut(s) 261
DpnI GATC 2 cut(s) 153, 267
DpnII GATC 2 cut(s) 151, 265
EaeI YGGCCR 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 218
EgeI GGCGCC 1 cut(s) 261
EheI GGCGCC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 5 cut(s) 11, 40, 85, 152, 191
FaiI YATR 7 cut(s) 9, 21, 38, 83, 150, 189, 255
FatI CATG 5 cut(s) 7, 36, 81, 148, 187
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 5 cut(s) 11, 40, 85, 152, 191
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 123, 149
Hpy188III TCNNGA 3 cut(s) 8, 149, 167
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 5 cut(s) 11, 40, 85, 152, 191
HspAI GCGC 1 cut(s) 260
KasI GGCGCC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 265
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 69, 173, 180, 276
Lsp1109I GCAGC 1 cut(s) 37
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 70, 129
MalI GATC 2 cut(s) 153, 267
MboI GATC 2 cut(s) 151, 265
MboII GAAGA 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 217
MluCI AATT 2 cut(s) 170, 270
MluNI TGGCCA 1 cut(s) 217
Mly113I GGCGCC 1 cut(s) 260
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 6 cut(s) 88, 113, 127, 185, 216, 241
Mox20I TGGCCA 1 cut(s) 217
MscI TGGCCA 1 cut(s) 217
MseI TTAA 2 cut(s) 273, 289
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 217
MspI CCGG 1 cut(s) 263
NarI GGCGCC 1 cut(s) 260
NdeII GATC 2 cut(s) 151, 265
NlaIII CATG 5 cut(s) 11, 40, 85, 152, 191
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 129
PagI TCATGA 2 cut(s) 7, 148
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 261
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 2 cut(s) 273, 289
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 151, 265
SchI GAGTC 1 cut(s) 13
SetI ASST 5 cut(s) 72, 100, 114, 139, 283
SfoI GGCGCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 2 cut(s) 170, 270
SspDI GGCGCC 1 cut(s) 259
SspI AATATT 1 cut(s) 17
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 72
TasI AATT 2 cut(s) 170, 270
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 2 cut(s) 273, 289
Tru9I TTAA 2 cut(s) 273, 289
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.