Rh4DG095300
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0034180
Physical Location & Seq
Reverse (-)
14385358 .. 14385729
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG095300.1

Sequence Viewer

Length: 372 bp
ATGTCTATACATGGCACAATTTCCAAGGCATGGGTACTAATGCAACAAATTTTCTTGTCCCACCGCATCCAAGTACCACTCATGAGTCATGACCAATATTATGAGCAGCATTTCAACATGAACCATCATCAAGTGCCAGCGTTGAAAAACATAACACCCTCCATGAGTAGCCTTGAAGCTCTCCTCTCCAAGCTTCCCTCTGTGGTGTCGTCACCACCTAATACTACTCATGATCATCACCAGTTTCCAGAATTGTCTCATCATCATCATGGAGGACTGTGGAGCAGAAAGTTGTGGCCAAGGAGGAAACTGATGTACAAGAAGAAAGAGGAATATGGGGCGCCGGATCAAATTAAAGAAGGTTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

123

Amino Acids

14.3

Weight (kDa)

9.48

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034180)

Species Orthologous Gene IDs
rosa_samantha Rh4BG098400 Rh4DG095300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 30
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 3 cut(s) 36, 75, 317
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 3 cut(s) 115, 145, 176
AluBI AGCT 2 cut(s) 179, 193
AluI AGCT 2 cut(s) 179, 193
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 48
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 204, 230
BalI TGGCCA 1 cut(s) 298
BanI GGYRCC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 132
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 24, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 24, 299
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 1 cut(s) 298
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 232, 346
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 298
BspHI TCATGA 3 cut(s) 81, 88, 229
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 24, 299
BssMI GATC 2 cut(s) 232, 346
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 24, 299
Bst4CI ACNGT 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 235, 349
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 2 cut(s) 232, 346
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 3 cut(s) 81, 88, 229
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 3 cut(s) 35, 74, 316
CviAII CATG 8 cut(s) 11, 30, 82, 89, 118, 163, 230, 269
CviJI RGCY 4 cut(s) 171, 179, 193, 298
CviKI_1 RGCY 4 cut(s) 171, 179, 193, 298
CviQI GTAC 3 cut(s) 35, 74, 316
DinI GGCGCC 1 cut(s) 342
DpnI GATC 2 cut(s) 234, 348
DpnII GATC 2 cut(s) 232, 346
EaeI YGGCCR 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 24, 299
EcoT14I CCWWGG 2 cut(s) 24, 299
EgeI GGCGCC 1 cut(s) 342
EheI GGCGCC 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 24, 299
FaeI CATG 8 cut(s) 14, 33, 85, 92, 121, 166, 233, 272
FaqI GGGAC 1 cut(s) 43
FatI CATG 8 cut(s) 10, 29, 81, 88, 117, 162, 229, 268
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 344
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 8 cut(s) 14, 33, 85, 92, 121, 166, 233, 272
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 204, 230
Hpy188III TCNNGA 4 cut(s) 82, 89, 230, 248
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 8 cut(s) 14, 33, 85, 92, 121, 166, 233, 272
HspAI GCGC 1 cut(s) 341
KasI GGCGCC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 346
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 4 cut(s) 150, 254, 261, 357
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 210
MalI GATC 2 cut(s) 234, 348
MboI GATC 2 cut(s) 232, 346
MboII GAAGA 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 4 cut(s) 18, 48, 251, 351
MluNI TGGCCA 1 cut(s) 298
Mly113I GGCGCC 1 cut(s) 341
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 6 cut(s) 169, 194, 208, 266, 297, 322
Mox20I TGGCCA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 298
MseI TTAA 2 cut(s) 354, 370
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 298
MspI CCGG 1 cut(s) 344
NarI GGCGCC 1 cut(s) 341
NdeII GATC 2 cut(s) 232, 346
NlaIII CATG 8 cut(s) 14, 33, 85, 92, 121, 166, 233, 272
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 210
PagI TCATGA 3 cut(s) 81, 88, 229
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 93
PluTI GGCGCC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 3 cut(s) 36, 75, 317
RsaNI GTAC 3 cut(s) 35, 74, 316
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 354, 370
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 232, 346
SchI GAGTC 1 cut(s) 94
SetI ASST 4 cut(s) 181, 195, 220, 364
SfaNI GCATC 1 cut(s) 75
SfoI GGCGCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 4 cut(s) 18, 48, 251, 351
SsiI CCGC 1 cut(s) 64
SspDI GGCGCC 1 cut(s) 340
SspI AATATT 1 cut(s) 98
StyI CCWWGG 2 cut(s) 24, 299
TaaI ACNGT 1 cut(s) 279
TasI AATT 4 cut(s) 18, 48, 251, 351
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 2 cut(s) 354, 370
Tru9I TTAA 2 cut(s) 354, 370
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 30
XapI RAATTY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.