Rh4BG098500
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0034181
Physical Location & Seq
Reverse (-)
16863224 .. 16864345
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG098500.1

Sequence Viewer

Length: 318 bp
ATGGACGGACATATTAACCCTTTGGCAGTGACTCATCTGCTTCAACACACACTGAGAAGCTTGTGCAGTCAAGAAAATTCACGTGGAATTATGCCGTCTTTTGAAGGATCCTCCCAAGAAACTACCTACCACCCTAATTGGAAGGTCATGGAGCTCATGACAGGTCAAGAGGGAACAGAAGGAATTGGATATTGGTTTTGGAAGATGTACTACCATGGACTGCAACCTGAGCTTTCTTCAAGATATCTACAACTATGGAGAAGATTGATAGGGAAAGTGGCAGCCGATCATAGTCACCATAACTCTGATAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

105

Amino Acids

12.16

Weight (kDa)

6.42

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034181)

Species Orthologous Gene IDs
rosa_samantha Rh4BG098500 Rh4DG095400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 102, 115
AcsI RAATTY 1 cut(s) 76
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 3 cut(s) 44, 104, 240
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 60, 154, 232
AluI AGCT 3 cut(s) 60, 154, 232
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 2 cut(s) 102, 115
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 287
BamHI GGATCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbrPI CACGTG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 44, 219
BseXI GCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 107, 286
Bsp19I CCATGG 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 45, 220
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 102, 115
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 107, 286
BssT1I CCWWGG 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 53, 228
BstDSI CCRYGG 1 cut(s) 214
BstKTI GATC 2 cut(s) 110, 289
BstMBI GATC 2 cut(s) 107, 286
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 50
CciI TCATGA 1 cut(s) 156
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 3 cut(s) 148, 157, 215
CviJI RGCY 4 cut(s) 60, 154, 232, 284
CviKI_1 RGCY 4 cut(s) 60, 154, 232, 284
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 53, 228
DpnI GATC 2 cut(s) 109, 288
DpnII GATC 2 cut(s) 107, 286
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 154
Eco72I CACGTG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 154
EcoRV GATATC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 151, 160, 218
FaiI YATR 8 cut(s) 12, 92, 149, 158, 216, 256, 291, 300
FatI CATG 3 cut(s) 147, 156, 214
Fnu4HI GCNGC 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 151, 160, 218
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 4 cut(s) 71, 157, 167, 240
HpyAV CCTTC 3 cut(s) 98, 136, 173
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 66, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 53, 228
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 151, 160, 218
Kzo9I GATC 2 cut(s) 107, 286
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 147, 240
Lsp1109I GCAGC 1 cut(s) 293
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 28, 293
MalI GATC 2 cut(s) 109, 288
MboI GATC 2 cut(s) 107, 286
MboII GAAGA 3 cut(s) 214, 228, 273
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 76, 87, 136, 183, 313
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 121, 163
MseI TTAA 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 214
NdeII GATC 2 cut(s) 107, 286
NlaIII CATG 3 cut(s) 151, 160, 218
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 28, 293
PagI TCATGA 1 cut(s) 156
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 25
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 156
PspCI CACGTG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 2 cut(s) 107, 286
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 156
SetI ASST 8 cut(s) 62, 85, 128, 147, 156, 166, 229, 234
Sse9I AATT 5 cut(s) 76, 87, 136, 183, 313
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 85
TasI AATT 5 cut(s) 76, 87, 136, 183, 313
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 33, 57
TseFI GTSAC 2 cut(s) 28, 293
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 2 cut(s) 28, 293
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 33, 57
XapI RAATTY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.