Rh4DG095400
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0034181
Physical Location & Seq
Reverse (-)
14386463 .. 14386983
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG095400.1

Sequence Viewer

Length: 318 bp
ATGGACGGACATATTAACCCTTTGGCAGTGACTCATCTGCTTCAACACACACTGAGAAGCTTGTGCAGTCAAGAAAATTCACGTGGAATTATGCCGTCTTTTGAAGGATCCTCCCAAGAAACTACCTACCACCCTAATTGGAAGGTCATGGAGCTCATGACAGGTCAAGAGGTAACAGAAGGAATTGGATATTGGTTTTGGAAGATCGTTTCTGCAACTTTGGAGCCTCAGCCTCACCAGCTTATGATCAGATCAACTCATCCACTGCTGACTGTCCAGGTGGCCCTTCTTCAGTTTATGGTGGTGATTTCGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

105

Amino Acids

11.93

Weight (kDa)

6.01

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034181)

Species Orthologous Gene IDs
rosa_samantha Rh4BG098500 Rh4DG095400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 102, 115
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 275
AcvI CACGTG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 44, 104
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 60, 154, 241
AluI AGCT 3 cut(s) 60, 154, 241
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 2 cut(s) 102, 115
AoxI GGCC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 227, 316
BamHI GGATCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 278
BclI TGATCA 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 109, 225
BmrFI CCNGG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 83
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 44, 242
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 156
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 4 cut(s) 107, 204, 246, 251
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 45, 241
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 109, 225
BspPI GGATC 2 cut(s) 102, 115
BssMI GATC 4 cut(s) 107, 204, 246, 251
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 53, 228
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 110, 207, 249, 254
BstMBI GATC 4 cut(s) 107, 204, 246, 251
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 2 cut(s) 33, 263
BtsIMutI CAGTG 3 cut(s) 33, 50, 263
CciI TCATGA 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 2 cut(s) 148, 157
CviJI RGCY 6 cut(s) 60, 154, 226, 232, 241, 284
CviKI_1 RGCY 6 cut(s) 60, 154, 226, 232, 241, 284
DdeI CTNAG 2 cut(s) 53, 228
DpnI GATC 4 cut(s) 109, 206, 248, 253
DpnII GATC 4 cut(s) 107, 204, 246, 251
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 275
Eco72I CACGTG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 2 cut(s) 151, 160
FaiI YATR 7 cut(s) 12, 92, 149, 158, 245, 299, 316
FatI CATG 2 cut(s) 147, 156
FbaI TGATCA 1 cut(s) 246
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 284
Hin1II CATG 2 cut(s) 151, 160
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 31
HphI GGTGA 2 cut(s) 227, 316
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 3 cut(s) 71, 157, 167
HpyAV CCTTC 4 cut(s) 98, 136, 173, 296
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 66, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 53, 228
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 2 cut(s) 151, 160
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 4 cut(s) 107, 204, 246, 251
LmnI GCTCC 2 cut(s) 151, 223
LpnPI CCDG 4 cut(s) 147, 251, 263, 290
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 28, 172
MalI GATC 4 cut(s) 109, 206, 248, 253
MboI GATC 4 cut(s) 107, 204, 246, 251
MboII GAAGA 2 cut(s) 214, 281
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 4 cut(s) 76, 87, 136, 183
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 4 cut(s) 121, 163, 237, 243
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 4 cut(s) 107, 204, 246, 251
NlaIII CATG 2 cut(s) 151, 160
NlaIV GGNNCC 2 cut(s) 109, 225
NmuCI GTSAC 1 cut(s) 28
PagI TCATGA 1 cut(s) 156
PleI GAGTC 1 cut(s) 25
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 276
PspCI CACGTG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 109, 225
PspPI GGNCC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 107
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 4 cut(s) 107, 204, 246, 251
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 156
SetI ASST 9 cut(s) 62, 85, 128, 147, 156, 166, 174, 243, 282
Sse9I AATT 4 cut(s) 76, 87, 136, 183
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 311
TasI AATT 4 cut(s) 76, 87, 136, 183
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 3 cut(s) 33, 57, 270
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 3 cut(s) 33, 57, 270
XapI RAATTY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.