Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0406541 |
| rosa_samantha | Rh4AG139200 Rh4BG136300 Rh4DG133600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 257 |
| AfaI | GTAC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 88, 89 |
| AgsI | TTSAA | 1 cut(s) | 318 |
| Alw21I | GWGCWC | 1 cut(s) | 193 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| AoxI | GGCC | 1 cut(s) | 229 |
| ApoI | RAATTY | 1 cut(s) | 257 |
| Bbv12I | GWGCWC | 1 cut(s) | 193 |
| BccI | CCATC | 1 cut(s) | 222 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 83 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 88, 89 |
| BseDI | CCNNGG | 1 cut(s) | 83 |
| BseGI | GGATG | 2 cut(s) | 214, 282 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 88, 89 |
| BseYI | CCCAGC | 2 cut(s) | 24, 88 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| BshFI | GGCC | 1 cut(s) | 231 |
| BsiHKAI | GWGCWC | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 88, 89 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 231 |
| Bsp1286I | GDGCHC | 1 cut(s) | 193 |
| BspANI | GGCC | 1 cut(s) | 231 |
| BspHI | TCATGA | 1 cut(s) | 252 |
| BssECI | CCNNGG | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 209 |
| BstF5I | GGATG | 2 cut(s) | 214, 282 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BsuRI | GGCC | 1 cut(s) | 231 |
| BtsCI | GGATG | 2 cut(s) | 214, 282 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 209 |
| CciI | TCATGA | 1 cut(s) | 252 |
| Csp6I | GTAC | 1 cut(s) | 21 |
| CviAII | CATG | 2 cut(s) | 248, 253 |
| CviJI | RGCY | 4 cut(s) | 28, 88, 231, 245 |
| CviKI_1 | RGCY | 4 cut(s) | 28, 88, 231, 245 |
| CviQI | GTAC | 1 cut(s) | 21 |
| DraI | TTTAAA | 1 cut(s) | 78 |
| Eco32I | GATATC | 1 cut(s) | 95 |
| EcoRV | GATATC | 1 cut(s) | 95 |
| FaeI | CATG | 2 cut(s) | 251, 256 |
| FaiI | YATR | 6 cut(s) | 39, 202, 225, 249, 254, 310 |
| FatI | CATG | 2 cut(s) | 247, 252 |
| FokI | GGATG | 2 cut(s) | 201, 269 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GsaI | CCCAGC | 2 cut(s) | 28, 92 |
| HaeIII | GGCC | 1 cut(s) | 231 |
| Hin1II | CATG | 2 cut(s) | 251, 256 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 166, 274 |
| Hpy188III | TCNNGA | 1 cut(s) | 253 |
| HpyAV | CCTTC | 1 cut(s) | 289 |
| HpyCH4V | TGCA | 1 cut(s) | 113 |
| Hsp92II | CATG | 2 cut(s) | 251, 256 |
| LmnI | GCTCC | 3 cut(s) | 153, 216, 304 |
| LpnPI | CCDG | 4 cut(s) | 18, 38, 42, 74 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeIII | GTNAC | 1 cut(s) | 263 |
| MhlI | GDGCHC | 1 cut(s) | 193 |
| MluCI | AATT | 2 cut(s) | 257, 313 |
| MnlI | CCTC | 1 cut(s) | 93 |
| MseI | TTAA | 1 cut(s) | 77 |
| MslI | CAYNNNNRTG | 1 cut(s) | 307 |
| NlaIII | CATG | 2 cut(s) | 251, 256 |
| NmeAIII | GCCGAG | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 263 |
| PagI | TCATGA | 1 cut(s) | 252 |
| PspFI | CCCAGC | 2 cut(s) | 24, 88 |
| RsaI | GTAC | 1 cut(s) | 22 |
| RsaNI | GTAC | 1 cut(s) | 21 |
| RseI | CAYNNNNRTG | 1 cut(s) | 307 |
| SaqAI | TTAA | 1 cut(s) | 77 |
| SduI | GDGCHC | 1 cut(s) | 193 |
| SetI | ASST | 2 cut(s) | 61, 281 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 307 |
| Sse9I | AATT | 2 cut(s) | 257, 313 |
| SspMI | CTAG | 1 cut(s) | 98 |
| TasI | AATT | 2 cut(s) | 257, 313 |
| Tru1I | TTAA | 1 cut(s) | 77 |
| Tru9I | TTAA | 1 cut(s) | 77 |
| TseFI | GTSAC | 1 cut(s) | 263 |
| Tsp45I | GTSAC | 1 cut(s) | 263 |
| TspDTI | ATGAA | 3 cut(s) | 172, 269, 271 |
| XapI | RAATTY | 1 cut(s) | 257 |
| XspI | CTAG | 1 cut(s) | 98 |