Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0025469

Physical Location & Seq

Genomic Coordinates Reverse (-)

36166953 .. 36193407

Gene Structure 26455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGAAGAGGAACGATTCCGAACTTGGACCGGACTGGAGAAGAGGAACTGGGTTGCGTCCGAGCAGAAGAGAACCGATCGAGGGTCTTGTTTCCGGACTGGAGAACGATCGGAACTGGGTCGCGAAAATTCATAAGGGAACATCTAGGGAGGACAACCTTTGCTACCGTGTTGCTGTCTTAAAGAGTGGAAATGAGGATGATGAAGATAGGCATAGTAGTAGGACTAATGGGGTAGAAAGGTCGTTTTCAGATTCTTGGTCGGAGCTAAGAGGCTGCGGGGAGCGAAATGGGGAAGCAAAGGGTTTCAATCCAAAGATTACGAGGTGCAACAACCTTGCATTTGAGTTTCAATTCAAGCCTAAATGTACTCTTGTTAGATGGAATTGGTTTATGAAGCCTGGTGCCATCCAAACATCTTCATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

143

Amino Acids

16.37

Weight (kDa)

9.02

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	62 - 112	9.4e-10	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000032.1_g000010
rosa_samantha	Rh4BG209600 Rh4CG220500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	310, 353, 358
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	375, 416
BciT130I	CCWGG	1 cut(s)	402
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	2 cut(s)	60, 127
BmuI	ACTGGG	2 cut(s)	60, 127
BpmI	CTGGAG	2 cut(s)	58, 122
BsaWI	WCCGGW	2 cut(s)	31, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	41, 55, 105, 122
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	205, 408
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	4 cut(s)	41, 55, 105, 122
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	2 cut(s)	81, 112
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	81, 112
BsiSI	CCGG	2 cut(s)	32, 96
BslI	CCNNNNNNNGG	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	78, 109
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	4 cut(s)	41, 55, 105, 122
BssMI	GATC	2 cut(s)	78, 109
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	3 cut(s)	2, 37, 64
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	205, 408
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	81, 112
BstMBI	GATC	2 cut(s)	78, 109
BstMCI	CGRYCG	2 cut(s)	81, 112
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	205, 408
BtuMI	TCGCGA	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	369
CviJI	RGCY	4 cut(s)	268, 276, 361, 400
CviKI_1	RGCY	4 cut(s)	268, 276, 361, 400
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	80, 111
DpnII	GATC	2 cut(s)	78, 109
Eam1104I	CTCTTC	3 cut(s)	2, 37, 64
EarI	CTCTTC	3 cut(s)	2, 37, 64
Eco47I	GGWCC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	400
FaiI	YATR	4 cut(s)	135, 216, 395, 430
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	212, 395
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	277
GsuI	CTGGAG	2 cut(s)	58, 122
HapII	CCGG	2 cut(s)	32, 96
HgaI	GACGC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	17, 254
HpaII	CCGG	2 cut(s)	32, 96
Hpy188I	TCNGA	5 cut(s)	22, 63, 114, 253, 265
Hpy188III	TCNNGA	2 cut(s)	96, 124
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	330, 341
HpyF3I	CTNAG	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	78, 109
LmnI	GCTCC	2 cut(s)	265, 283
LpnPI	CCDG	8 cut(s)	22, 36, 45, 86, 103, 109, 387, 414
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	147
MalI	GATC	2 cut(s)	80, 111
MboI	GATC	2 cut(s)	78, 109
MboII	GAAGA	6 cut(s)	19, 54, 81, 218, 411, 417
MluCI	AATT	3 cut(s)	129, 353, 385
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	7 cut(s)	3, 38, 76, 145, 190, 266, 318
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	1 cut(s)	182
MspI	CCGG	2 cut(s)	32, 96
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	125
NdeII	GATC	2 cut(s)	78, 109
NlaIV	GGNNCC	1 cut(s)	406
NruI	TCGCGA	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	17, 254
PkrI	GCNGC	1 cut(s)	278
Ple19I	CGATCG	2 cut(s)	81, 112
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	29
PvuI	CGATCG	2 cut(s)	81, 112
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	78, 109
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	402
SetI	ASST	5 cut(s)	162, 245, 270, 329, 339
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	3 cut(s)	129, 353, 385
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	129, 353, 385
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	17, 254
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	5 cut(s)	122, 219, 410, 411, 417
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	129
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.