Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0026603

Physical Location & Seq

Genomic Coordinates Reverse (-)

50145528 .. 50149690

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG339100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCGGAGATTCAGTTGGGTTCTCACACCGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTGATTCTGGTTGTTCTTGCGGCCATAGATCTTGGTCTGAACTTGATAGAGCCTTTTCACCGCTTTGTTGGACAGGATATGATGACAGACCTGAAATACCCATTGAAAGGCAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTGTTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCCGTTTTAACTGATGCAATCAAAGATGGTGTTGGACGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACCGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATACTTCATGTAAGAACCTTACTAATTTTATGAAACTGTACATGAATATAGGGATTTGTCTGTGTGATATCAAACCCCATTTCTGTAGGACATGTTTTATTCTCCCAGATTTGCTTTCTCATTTATACAGTACTGTATGGGAGTTGGGTATGCTATCCATCTATTTTCTTTCCTTCATTTGCGGGTGGGGCCATTTTTCTCTACTGCTTTGGATTTCTTGCTTGCTCATTTGGTTTTTTCTTCTGTTATCTGTATCACCGCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

255

Amino Acids

29.13

Weight (kDa)

8.08

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	100 - 169	3.8e-10	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0026603)

Species	Orthologous Gene IDs
rosa_samantha	Rh4BG339100 Rh4CG354200 Rh4DG334200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AasI	GACNNNNNNGTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	7 cut(s)	98, 139, 236, 330, 495, 681, 758
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	3 cut(s)	448, 539, 631
AfiI	CCNNNNNNNGG	2 cut(s)	185, 206
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	50, 184
AluBI	AGCT	1 cut(s)	486
AluI	AGCT	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	3 cut(s)	99, 304, 688
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	2 cut(s)	128, 747
BccI	CCATC	4 cut(s)	251, 350, 398, 665
BceAI	ACGGC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	583
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	1 cut(s)	689
BmsI	GCATC	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 206
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	185, 206
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	101, 306, 690
BsiSI	CCGG	2 cut(s)	5, 450
BslI	CCNNNNNNNGG	2 cut(s)	185, 206
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	101, 306, 690
Bso31I	GGTCTC	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	106, 283, 421
BspACI	CCGC	7 cut(s)	98, 139, 236, 330, 495, 681, 758
BspANI	GGCC	3 cut(s)	101, 306, 690
BspLI	GGNNCC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	537
BssMI	GATC	3 cut(s)	106, 283, 421
Bst4CI	ACNGT	6 cut(s)	31, 196, 231, 537, 629, 634
Bst6I	CTCTTC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	3 cut(s)	240, 497, 722
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	109, 286, 424
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	106, 283, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 492, 687
BstNSI	RCATGY	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	101, 306, 690
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	240, 497, 722
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	3 cut(s)	447, 538, 630
CviAII	CATG	7 cut(s)	41, 71, 293, 442, 507, 541, 591
CviJI	RGCY	6 cut(s)	79, 101, 130, 306, 486, 690
CviKI_1	RGCY	6 cut(s)	79, 101, 130, 306, 486, 690
CviQI	GTAC	3 cut(s)	447, 538, 630
DpnI	GATC	3 cut(s)	108, 285, 423
DpnII	GATC	3 cut(s)	106, 283, 421
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco147I	AGGCCT	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	7 cut(s)	44, 74, 296, 445, 510, 544, 594
FatI	CATG	7 cut(s)	40, 70, 292, 441, 506, 540, 590
FauI	CCCGC	2 cut(s)	488, 674
FauNDI	CATATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	101, 306, 690
HapII	CCGG	2 cut(s)	5, 450
Hin1II	CATG	7 cut(s)	44, 74, 296, 445, 510, 544, 594
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	2 cut(s)	10, 82
HpaII	CCGG	2 cut(s)	5, 450
HphI	GGTGA	2 cut(s)	128, 747
Hpy166II	GTNNAC	2 cut(s)	256, 447
Hpy188I	TCNGA	3 cut(s)	117, 216, 269
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	2 cut(s)	256, 447
HpyAV	CCTTC	5 cut(s)	211, 264, 317, 467, 682
HpyCH4III	ACNGT	6 cut(s)	31, 196, 231, 537, 629, 634
HpyCH4V	TGCA	4 cut(s)	70, 224, 289, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 492, 687
Hsp92II	CATG	7 cut(s)	44, 74, 296, 445, 510, 544, 594
Kzo9I	GATC	3 cut(s)	106, 283, 421
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	231, 427
MalI	GATC	3 cut(s)	108, 285, 423
MboI	GATC	3 cut(s)	106, 283, 421
MboII	GAAGA	2 cut(s)	469, 731
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	2 cut(s)	219, 523
MmeI	TCCRAC	2 cut(s)	127, 343
MnlI	CCTC	2 cut(s)	51, 381
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	3 cut(s)	338, 468, 766
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	2 cut(s)	5, 450
MwoI	GCNNNNNNNGC	3 cut(s)	76, 492, 687
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	3 cut(s)	106, 283, 421
NlaIII	CATG	7 cut(s)	44, 74, 296, 445, 510, 544, 594
NlaIV	GGNNCC	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	594
PceI	AGGCCT	1 cut(s)	306
PciI	ACATGT	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	10, 82
PflFI	GACNNNGTC	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	590
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	689
PspPI	GGNCC	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	372
RsaI	GTAC	3 cut(s)	448, 539, 631
RsaNI	GTAC	3 cut(s)	447, 538, 630
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	338, 468, 766
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	106, 283, 421
Sau96I	GGNCC	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	631
SetI	ASST	6 cut(s)	38, 62, 171, 373, 488, 519
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	219, 523
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	7 cut(s)	98, 139, 236, 330, 495, 681, 758
StuI	AGGCCT	1 cut(s)	306
TaaI	ACNGT	6 cut(s)	31, 196, 231, 537, 629, 634
TasI	AATT	2 cut(s)	219, 523
TatI	WGTACW	2 cut(s)	537, 629
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	10, 82
Tru1I	TTAA	3 cut(s)	338, 468, 766
Tru9I	TTAA	3 cut(s)	338, 468, 766
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	6 cut(s)	53, 253, 495, 545, 557, 664
Tth111I	GACNNNGTC	1 cut(s)	372
XceI	RCATGY	1 cut(s)	594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.