Rh4DG334200

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0026603
Physical Location & Seq
Reverse (-)
55727638 .. 55731300
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG334200.1

Sequence Viewer

Length: 798 bp
ATGCCATCAAAAATGCCGGAGATTCAGTTGGGTTCTCACACCGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTGATTCTGGTGGTTCTTGCGGCCATAGATCTTGGTCTGAACTTGATAGAGCCTTTTCACCGCTTTGTTGGAGAGGATATGATGACAGACCTGAAATACCCATTGAAAGGCAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTGTTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCCGTTTTAACTGATGCAATCAAAGATGGTGTTGGACGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACTGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATACTTCATGTAAGAACCTTACTAATTTTACGAAACTGTACATGAATATAGGGATTTGTCTGTGTGATATCAAACCCCATTTCTGTAGGACATGTTTTATTCTCCCAGATTTGCTTTCTCATTTATACAGTACTGTATGGGAGTTGGGTATGCTATCCATCCATTTTCTTTCCTTCATTTGCGGATTTTCTATGCATTACCTGGCCATTTTTCTCTACTGCTTTGGATTTTTTGCTTGCTCATTTGGTTTTTTCTTCTGTTATCTGTATCACCGTAACATTAATTGA

Protein Analysis

265

Amino Acids

30.35

Weight (kDa)

8.27

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 104 - 173 7.4e-10 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026603)

Species Orthologous Gene IDs
rosa_samantha Rh4BG339100 Rh4CG354200 Rh4DG334200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AasI GACNNNNNNGTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 267
AciI CCGC 6 cut(s) 110, 151, 248, 342, 507, 693
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 2 cut(s) 111, 714
AfaI GTAC 3 cut(s) 460, 551, 643
AfiI CCNNNNNNNGG 2 cut(s) 197, 218
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 2 cut(s) 62, 196
AjnI CCWGG 1 cut(s) 711
AluBI AGCT 1 cut(s) 498
AluI AGCT 1 cut(s) 498
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 428
AoxI GGCC 3 cut(s) 111, 316, 714
AseI ATTAAT 1 cut(s) 792
AsuHPI GGTGA 2 cut(s) 140, 773
BalI TGGCCA 1 cut(s) 716
BccI CCATC 5 cut(s) 13, 263, 362, 410, 677
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 713
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 595
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 713
BmrFI CCNGG 1 cut(s) 713
BmsI GCATC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 54
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 218
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 713
BseGI GGATG 2 cut(s) 292, 669
BseLI CCNNNNNNNGG 2 cut(s) 197, 218
BseNI ACTGG 1 cut(s) 466
BsgI GTGCAG 1 cut(s) 284
BshFI GGCC 3 cut(s) 113, 318, 716
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 197, 218
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 3 cut(s) 113, 318, 716
Bso31I GGTCTC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 3 cut(s) 118, 295, 433
BspACI CCGC 6 cut(s) 110, 151, 248, 342, 507, 693
BspANI GGCC 3 cut(s) 113, 318, 716
BspPI GGATC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 466
BssMI GATC 3 cut(s) 118, 295, 433
Bst2UI CCWGG 1 cut(s) 713
Bst4CI ACNGT 7 cut(s) 43, 208, 243, 549, 641, 646, 785
Bst6I CTCTTC 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 3 cut(s) 252, 509, 748
BstF5I GGATG 2 cut(s) 292, 669
BstKTI GATC 3 cut(s) 121, 298, 436
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 118, 295, 433
BstMWI GCNNNNNNNGC 2 cut(s) 88, 504
BstNI CCWGG 1 cut(s) 713
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 711
BstSFI CTRYAG 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 113, 318, 716
BtsCI GGATG 2 cut(s) 292, 669
Cac8I GCNNGC 3 cut(s) 252, 509, 748
Csp6I GTAC 3 cut(s) 459, 550, 642
CviAII CATG 7 cut(s) 53, 83, 305, 454, 519, 553, 603
CviJI RGCY 6 cut(s) 91, 113, 142, 318, 498, 716
CviKI_1 RGCY 6 cut(s) 91, 113, 142, 318, 498, 716
CviQI GTAC 3 cut(s) 459, 550, 642
DpnI GATC 3 cut(s) 120, 297, 435
DpnII GATC 3 cut(s) 118, 295, 433
DrdI GACNNNNNNGTC 1 cut(s) 384
DseDI GACNNNNNNGTC 1 cut(s) 384
EaeI YGGCCR 2 cut(s) 111, 714
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 711
EcoRV GATATC 1 cut(s) 580
EcoT22I ATGCAT 2 cut(s) 84, 708
FaeI CATG 7 cut(s) 56, 86, 308, 457, 522, 556, 606
FatI CATG 7 cut(s) 52, 82, 304, 453, 518, 552, 602
FauI CCCGC 1 cut(s) 500
FauNDI CATATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 299, 656
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 113, 318, 716
HapII CCGG 1 cut(s) 17
Hin1II CATG 7 cut(s) 56, 86, 308, 457, 522, 556, 606
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 2 cut(s) 22, 94
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 140, 773
Hpy166II GTNNAC 2 cut(s) 268, 459
Hpy188I TCNGA 3 cut(s) 129, 228, 281
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 268, 459
HpyAV CCTTC 5 cut(s) 223, 276, 329, 479, 694
HpyCH4III ACNGT 7 cut(s) 43, 208, 243, 549, 641, 646, 785
HpyCH4V TGCA 5 cut(s) 82, 236, 301, 359, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 504
Hsp92II CATG 7 cut(s) 56, 86, 308, 457, 522, 556, 606
Kzo9I GATC 3 cut(s) 118, 295, 433
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 243, 439, 785
MalI GATC 3 cut(s) 120, 297, 435
MboI GATC 3 cut(s) 118, 295, 433
MboII GAAGA 2 cut(s) 481, 757
MflI RGATCY 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 3 cut(s) 231, 535, 793
MluNI TGGCCA 1 cut(s) 716
MmeI TCCRAC 2 cut(s) 139, 355
MnlI CCTC 3 cut(s) 63, 157, 393
Mox20I TGGCCA 1 cut(s) 716
Mph1103I ATGCAT 2 cut(s) 84, 708
MscI TGGCCA 1 cut(s) 716
MseI TTAA 3 cut(s) 350, 480, 792
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 716
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 713
MvaI CCWGG 1 cut(s) 713
MwoI GCNNNNNNNGC 2 cut(s) 88, 504
NdeI CATATG 1 cut(s) 78
NdeII GATC 3 cut(s) 118, 295, 433
NlaIII CATG 7 cut(s) 56, 86, 308, 457, 522, 556, 606
NmuCI GTSAC 1 cut(s) 439
NsiI ATGCAT 2 cut(s) 84, 708
NspI RCATGY 1 cut(s) 606
PceI AGGCCT 1 cut(s) 318
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 2 cut(s) 22, 94
PflFI GACNNNGTC 1 cut(s) 384
PkrI GCNGC 1 cut(s) 112
PscI ACATGT 1 cut(s) 602
PshBI ATTAAT 1 cut(s) 792
PsiI TTATAA 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 711
PspGI CCWGG 1 cut(s) 711
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 384
RsaI GTAC 3 cut(s) 460, 551, 643
RsaNI GTAC 3 cut(s) 459, 550, 642
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 3 cut(s) 350, 480, 792
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 118, 295, 433
ScaI AGTACT 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 713
SetI ASST 7 cut(s) 50, 74, 183, 385, 500, 531, 714
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 3 cut(s) 231, 535, 793
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 6 cut(s) 110, 151, 248, 342, 507, 693
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 711
TaaI ACNGT 7 cut(s) 43, 208, 243, 549, 641, 646, 785
TasI AATT 3 cut(s) 231, 535, 793
TatI WGTACW 3 cut(s) 458, 549, 641
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 22, 94
Tru1I TTAA 3 cut(s) 350, 480, 792
Tru9I TTAA 3 cut(s) 350, 480, 792
TseFI GTSAC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 5 cut(s) 65, 265, 507, 569, 676
Tth111I GACNNNGTC 1 cut(s) 384
VspI ATTAAT 1 cut(s) 792
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 643
Zsp2I ATGCAT 2 cut(s) 84, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.