Rh4CG023000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
4489833 .. 4490427
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG023000.1

Sequence Viewer

Length: 336 bp
ATGAAAGTTAAGATGATTACATGTTTAAATACAGTGATGGCATCAAAAGGTATTTCGAGAGGAACAAAGAGAATATTAAGAGAGTATGATGTTGAAAGTCGTGATAGTCAAGAAAAGATTCAACAAATTTGTACTACTCAAAACTCTGCTGTGAGAAGAACTGAATCTGATCATTTATGTTTTGGTGGGAATGAGGATCGTCCAGTTAACTCAAAGAGGTGGAAAACATTGTTCCATGAACAAACTGCTGGTGTTGGAGTTAGTGCAGCATCAAATATTCATAATGTGGTTGCAGAAGTTAGTACAGACTATTTATTCACGTGGATGTATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.62

Weight (kDa)

8.88

Isoelectric Point (pI)

65.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022717)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0388401 RchiOBHm_Chr4g0413131
rosa_samantha Rh2AG296100 Rh4CG023000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 126
AcvI CACGTG 1 cut(s) 321
AfaI GTAC 2 cut(s) 133, 304
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 95, 122
AlwI GGATC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 321
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 31
BclI TGATCA 1 cut(s) 169
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 2 cut(s) 50, 278
BsaAI YACGTR 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 285
Bsp143I GATC 2 cut(s) 169, 196
BspPI GGATC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 203
BssMI GATC 2 cut(s) 169, 196
Bst4CI ACNGT 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 321
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 2 cut(s) 172, 199
BstMBI GATC 2 cut(s) 169, 196
BstNSI RCATGY 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 39
Csp6I GTAC 2 cut(s) 132, 303
CviAII CATG 2 cut(s) 21, 236
CviQI GTAC 2 cut(s) 132, 303
DpnI GATC 2 cut(s) 171, 198
DpnII GATC 2 cut(s) 169, 196
DraI TTTAAA 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 321
FaeI CATG 2 cut(s) 24, 239
FaiI YATR 6 cut(s) 22, 87, 178, 237, 282, 330
FatI CATG 2 cut(s) 20, 235
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 24, 239
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 118, 164
HpaI GTTAAC 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 57, 101, 110
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 266, 293
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 2 cut(s) 24, 239
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 169, 196
LpnPI CCDG 2 cut(s) 216, 234
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 50, 278
MaeII ACGT 1 cut(s) 320
MalI GATC 2 cut(s) 171, 198
MboI GATC 2 cut(s) 169, 196
MboII GAAGA 1 cut(s) 168
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 53, 187, 210
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 4 cut(s) 9, 26, 77, 207
MslI CAYNNNNRTG 1 cut(s) 323
NdeII GATC 2 cut(s) 169, 196
NlaIII CATG 2 cut(s) 24, 239
NspI RCATGY 1 cut(s) 24
PciI ACATGT 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 118, 164
PkrI GCNGC 1 cut(s) 268
PmaCI CACGTG 1 cut(s) 321
PmlI CACGTG 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 321
PscI ACATGT 1 cut(s) 20
PspCI CACGTG 1 cut(s) 321
RsaI GTAC 2 cut(s) 133, 304
RsaNI GTAC 2 cut(s) 132, 303
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 4 cut(s) 9, 26, 77, 207
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 169, 196
SetI ASST 3 cut(s) 52, 221, 323
SfaNI GCATC 2 cut(s) 50, 278
SgeI CNNG 8 cut(s) 33, 69, 113, 122, 215, 248, 261, 331
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 126
SspI AATATT 2 cut(s) 75, 277
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 126
TatI WGTACW 2 cut(s) 131, 302
TfiI GAWTC 2 cut(s) 118, 164
Tru1I TTAA 4 cut(s) 9, 26, 77, 207
Tru9I TTAA 4 cut(s) 9, 26, 77, 207
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 17, 252, 269
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.