Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0032678

Physical Location & Seq

Genomic Coordinates Forward (+)

54983946 .. 54984832

Gene Structure 887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTAAGCAGGGTCAGGAATCTAGCCAAGCAATATCTGGGACAAGTGACAGTGAGGAAGTTGGAGATGCTGAAAGTGAGGAAGTTGGGGATGCTGAAACAGAAGTAGAAGAAAAAGATGAAGATGAATCTGGTGCCAGGAGACGGAGCTATTATAAATGCACATTCCAGGGATGCAATGTACGTAAGCACGTAGAGAGAGCAGCAACAGATCCTAAAGCCGTCATAACAACATATGAGGGGAAACATAATCATGATGTACCTGCTTCTATATCTGGCCGCCACCATGCAGCCAACAACAATGCATCAAATCTAAGATCAGGCAATCTGGGAACTGAAAAGCATGCCTCAGTTAGCAAGATGGATCCTCGAAACAATGACCAACAGCCTGTAGCACGTTTACGTTTAAAAGAAGAACAAATAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

5.38

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	47 - 86	1.9e-14	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0032678)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG321400 Rh4DG325200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	3 cut(s)	206, 359, 372
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	2 cut(s)	183, 261
AfiI	CCNNNNNNNGG	1 cut(s)	144
AjnI	CCWGG	2 cut(s)	137, 168
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	3 cut(s)	206, 359, 372
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	203, 290
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	215, 302
BccI	CCATC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	139, 170
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	3 cut(s)	204, 280, 291
BlsI	GCNGC	3 cut(s)	205, 281, 292
Bme1390I	CCNGG	2 cut(s)	139, 170
BmiI	GGNNCC	2 cut(s)	136, 366
BmrFI	CCNGG	2 cut(s)	139, 170
BmsI	GCATC	4 cut(s)	58, 82, 164, 314
BsaAI	YACGTR	2 cut(s)	185, 193
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	139, 170
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	97, 179
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	215, 302
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	211, 317, 364
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	136, 366
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	3 cut(s)	206, 359, 372
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	211, 317, 364
Bst2UI	CCWGG	2 cut(s)	139, 170
Bst4CI	ACNGT	1 cut(s)	53
BstBAI	YACGTR	2 cut(s)	185, 193
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	6, 314, 349
BstF5I	GGATG	2 cut(s)	97, 179
BstKTI	GATC	3 cut(s)	214, 320, 367
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	211, 317, 364
BstNI	CCWGG	2 cut(s)	139, 170
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	137, 168
BstSFI	CTRYAG	1 cut(s)	390
BstSNI	TACGTA	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	215, 302
BstX2I	RGATCY	2 cut(s)	211, 364
BstYI	RGATCY	2 cut(s)	211, 364
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	97, 179
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	345
CciI	TCATGA	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	182, 260
CviAII	CATG	3 cut(s)	254, 287, 344
CviJI	RGCY	6 cut(s)	27, 150, 221, 279, 293, 388
CviKI_1	RGCY	6 cut(s)	27, 150, 221, 279, 293, 388
CviQI	GTAC	2 cut(s)	182, 260
DdeI	CTNAG	3 cut(s)	6, 314, 349
DpnI	GATC	3 cut(s)	213, 319, 366
DpnII	GATC	3 cut(s)	211, 317, 364
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	137, 168
EcoT22I	ATGCAT	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	3 cut(s)	257, 290, 347
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	253, 286, 343
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	204, 280, 291
FokI	GGATG	2 cut(s)	104, 186
Fsp4HI	GCNGC	3 cut(s)	204, 280, 291
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	3 cut(s)	204, 280, 291
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	257, 290, 347
HinfI	GANTC	2 cut(s)	20, 128
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188III	TCNNGA	2 cut(s)	17, 254
Hpy8I	GTNNAC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	4 cut(s)	184, 192, 397, 403
HpyCH4V	TGCA	4 cut(s)	162, 177, 290, 305
HpyF3I	CTNAG	3 cut(s)	6, 314, 349
HpySE526I	ACGT	4 cut(s)	184, 192, 397, 403
Hsp92II	CATG	3 cut(s)	257, 290, 347
Kzo9I	GATC	3 cut(s)	211, 317, 364
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	2 cut(s)	215, 302
LweI	GCATC	4 cut(s)	58, 82, 164, 314
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	4 cut(s)	184, 192, 397, 403
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	213, 319, 366
MboI	GATC	3 cut(s)	211, 317, 364
MboII	GAAGA	3 cut(s)	122, 134, 425
MflI	RGATCY	2 cut(s)	211, 364
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	49, 73, 232, 358, 378
Mph1103I	ATGCAT	1 cut(s)	307
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	139, 170
MvaI	CCWGG	2 cut(s)	139, 170
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	211, 317, 364
NlaIII	CATG	3 cut(s)	257, 290, 347
NlaIV	GGNNCC	2 cut(s)	136, 366
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	20, 128
PkrI	GCNGC	3 cut(s)	205, 281, 292
Ppu21I	YACGTR	2 cut(s)	185, 193
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	137, 168
PspGI	CCWGG	2 cut(s)	137, 168
PspN4I	GGNNCC	2 cut(s)	136, 366
PsuI	RGATCY	2 cut(s)	211, 364
RsaI	GTAC	2 cut(s)	183, 261
RsaNI	GTAC	2 cut(s)	182, 260
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	3 cut(s)	204, 280, 291
Sau3AI	GATC	3 cut(s)	211, 317, 364
ScrFI	CCNGG	2 cut(s)	139, 170
SetI	ASST	6 cut(s)	152, 187, 195, 265, 400, 406
SfaNI	GCATC	4 cut(s)	58, 82, 164, 314
SfcI	CTRYAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	252
SnaBI	TACGTA	1 cut(s)	185
SphI	GCATGC	1 cut(s)	347
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	137, 168
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	4 cut(s)	187, 195, 400, 406
TaqI	TCGA	1 cut(s)	370
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	20, 128
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	203, 290
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	135, 141
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.