Rh5AG043200

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0032734
Physical Location & Seq
Reverse (-)
3410800 .. 3423685
12886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG043200.1

Sequence Viewer

Length: 585 bp
ATGGGAGATACATCATCAAGTGGAAAGTATCTTCATACTGCTAATGATTTAACTGTCACAATTCAAGATGGACGTCCCATATTGCAGCTCTTGGACAATGGCAATCTGATCTTGAGAGATGAAAGTGGTGCAGATGCAGAGGGGTATGTGATTTGGCAGAGTTTTGATGACATAACAGACACTTTGTTGCCTGAAATGAAGCTTGGCTGGAATTTGGTCACAGGTTCAAACCGGAATATGACGTCATGGTTGTCCTCCAGTGACCCCTCTGCCGGAGAATTTACTTTCAGTGTGGACAGGCCTGCTCAAGCACCTCAGTTGGTGGTTAGGAAAAGGTCTGCGAAGCTATATAGATGGGGGCCTTGGGATGGAGTCAGATTCAGTGGTAGCAATGAGCTCAAGTCCAATCCGGTTTTCACTCCAATTTTCAATATAAGCAGTGAAGAGAGAGCAAAAATGCAAAAGAAAACAGTCCTCCTAAGTCTCCTTCAGCCTGGATTAGAAACACTTGCACAGTCGAAGAAAACAGAGGAATGCAAAACAAAAAATTCCATCATAAACCACAAAACACTTCCATTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

194

Amino Acids

21.58

Weight (kDa)

6.74

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 21 - 83 3.8e-17 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032734)

Species Orthologous Gene IDs
rosa_samantha Rh5AG043200 Rh5BG042800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 76, 245
AcsI RAATTY 3 cut(s) 211, 278, 547
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 2 cut(s) 73, 242
AfiI CCNNNNNNNGG 2 cut(s) 272, 368
AgsI TTSAA 3 cut(s) 65, 228, 430
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 398, 430
AluBI AGCT 4 cut(s) 88, 202, 346, 397
AluI AGCT 4 cut(s) 88, 202, 346, 397
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 2 cut(s) 299, 359
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 3 cut(s) 211, 278, 547
AspS9I GGNCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 97
BccI CCATC 4 cut(s) 62, 348, 362, 560
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 488
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 241
BpuEI CTTGAG 3 cut(s) 133, 291, 383
BsaHI GRCGYC 2 cut(s) 73, 242
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 2 cut(s) 231, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 368
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 272, 368
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 2 cut(s) 301, 361
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 3 cut(s) 232, 273, 410
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 272, 368
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 2 cut(s) 301, 361
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 2 cut(s) 301, 361
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 2 cut(s) 73, 242
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 3 cut(s) 55, 472, 516
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 73, 242
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 315, 479
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 301, 361
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 4 cut(s) 265, 295, 388, 445
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 359
CviAII CATG 1 cut(s) 246
CviJI RGCY 8 cut(s) 88, 202, 207, 301, 346, 361, 397, 493
CviKI_1 RGCY 8 cut(s) 88, 202, 207, 301, 346, 361, 397, 493
DdeI CTNAG 2 cut(s) 315, 479
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 249
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 2 cut(s) 301, 361
HapII CCGG 3 cut(s) 232, 273, 410
Hin1I GRCGYC 2 cut(s) 73, 242
Hin1II CATG 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 372, 378
HpaII CCGG 3 cut(s) 232, 273, 410
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 108, 377
Hpy188III TCNNGA 3 cut(s) 65, 112, 582
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 3 cut(s) 55, 472, 516
HpyCH4IV ACGT 2 cut(s) 73, 242
HpyCH4V TGCA 6 cut(s) 85, 131, 137, 460, 512, 537
HpyF3I CTNAG 2 cut(s) 315, 479
HpySE526I ACGT 2 cut(s) 73, 242
Hsp92I GRCGYC 2 cut(s) 73, 242
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 124
MaeII ACGT 2 cut(s) 73, 242
MaeIII GTNAC 3 cut(s) 55, 217, 260
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 3 cut(s) 23, 455, 532
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 5 cut(s) 60, 211, 278, 423, 547
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 6 cut(s) 133, 265, 277, 324, 485, 523
MseI TTAA 1 cut(s) 50
MspI CCGG 3 cut(s) 232, 273, 410
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 1 cut(s) 495
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 3 cut(s) 55, 217, 260
PceI AGGCCT 1 cut(s) 301
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 359
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 399
SetI ASST 9 cut(s) 76, 90, 204, 226, 245, 316, 338, 348, 399
SfaNI GCATC 1 cut(s) 124
SmlI CTYRAG 3 cut(s) 112, 306, 398
SmoI CTYRAG 3 cut(s) 112, 306, 398
Sse9I AATT 5 cut(s) 60, 211, 278, 423, 547
SseBI AGGCCT 1 cut(s) 301
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 55, 472, 516
TaiI ACGT 2 cut(s) 76, 245
TaqI TCGA 1 cut(s) 518
TasI AATT 5 cut(s) 60, 211, 278, 423, 547
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 4 cut(s) 265, 295, 388, 445
TseFI GTSAC 3 cut(s) 55, 217, 260
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 3 cut(s) 55, 217, 260
TspDTI ATGAA 3 cut(s) 23, 135, 212
TspRI CASTG 4 cut(s) 265, 295, 388, 445
XapI RAATTY 3 cut(s) 211, 278, 547
ZraI GACGTC 2 cut(s) 74, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.