Rh5AG358100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0023077
Physical Location & Seq
Forward (+)
59607347 .. 59608467
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG358100.1

Sequence Viewer

Length: 393 bp
ATGCAGGCCCCTAATTTCCCTGTGGTGGGCTTCACCAGGACTAGAGATGAGCGTGATGAGGATGCTGTTGATTGCATTGGAGAAGGGGAGTCCATGGCATTGGATTCGGGGGGTGAAGTGGAGGATACAGCAGGAGGTCAATTGGCGAAAAGAAGATGGGTTTTGAGTGAGTTTTCTGAGCTTTCTACTGGTACTGGGGAGGGGCTTAACACCCAGCCATGTCTGAGGCACGACCCGGTACTGGTCAACCCATCCTTGTCAACATCTTTGAAGAGTGTTTCAAATGTTGACGTTTGTTTTGGAAAGGAGTCCAAATCCATTAAGGAGTCGAAGTCATCTGCAACTCTTAGAAGTAACAAAGAAAATTTAAATGTCTATCAGAGAAGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.15

Weight (kDa)

5.06

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023077)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002028.1_g000004
rosa_samantha Rh5AG358100 Rh5BG370400 Rh5DG384000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 2 cut(s) 193, 240
AfiI CCNNNNNNNGG 3 cut(s) 25, 26, 241
AgsI TTSAA 2 cut(s) 271, 282
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 25, 125
BccI CCATC 2 cut(s) 150, 259
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 37
BciVI GTATCC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 2 cut(s) 42, 391
BfuI GTATCC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 37, 236
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 37, 236
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 26, 241
Bse1I ACTGG 3 cut(s) 193, 199, 246
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 67, 251
BseLI CCNNNNNNNGG 3 cut(s) 25, 26, 241
BseMII CTCAG 2 cut(s) 168, 215
BseNI ACTGG 3 cut(s) 193, 199, 246
BseYI CCCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 25, 26, 241
BsnI GGCC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 93
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 169, 216
BspLI GGNNCC 1 cut(s) 9
BsrI ACTGG 3 cut(s) 193, 199, 246
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 177, 224, 347
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 67, 251
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 35, 234
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 67, 251
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 192, 239
CviAII CATG 2 cut(s) 94, 219
CviJI RGCY 5 cut(s) 8, 30, 181, 205, 217
CviKI_1 RGCY 5 cut(s) 8, 30, 181, 205, 217
CviQI GTAC 2 cut(s) 192, 239
DdeI CTNAG 3 cut(s) 177, 224, 347
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 97, 222
FaiI YATR 2 cut(s) 95, 220
FatI CATG 2 cut(s) 93, 218
FokI GGATG 2 cut(s) 74, 238
FspBI CTAG 2 cut(s) 42, 391
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 236
Hin1II CATG 2 cut(s) 97, 222
HincII GTYRAC 3 cut(s) 247, 261, 289
HindII GTYRAC 3 cut(s) 247, 261, 289
HinfI GANTC 4 cut(s) 89, 104, 308, 326
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 25, 125
Hpy166II GTNNAC 3 cut(s) 247, 261, 289
Hpy188I TCNGA 3 cut(s) 178, 225, 381
Hpy8I GTNNAC 3 cut(s) 247, 261, 289
HpyAV CCTTC 2 cut(s) 77, 378
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 4, 75, 341
HpyF3I CTNAG 3 cut(s) 177, 224, 347
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 97, 222
LpnPI CCDG 9 cut(s) 22, 33, 49, 117, 174, 180, 227, 227, 249
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 42, 391
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 2 cut(s) 165, 283
MfeI CAATTG 1 cut(s) 140
MluCI AATT 3 cut(s) 13, 140, 364
MlyI GAGTC 3 cut(s) 98, 317, 335
MnlI CCTC 5 cut(s) 52, 115, 128, 193, 219
MseI TTAA 3 cut(s) 207, 321, 368
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 37, 236
MunI CAATTG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 37
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 2 cut(s) 97, 222
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 104
PleI GAGTC 3 cut(s) 97, 316, 334
PpsI GAGTC 3 cut(s) 97, 316, 334
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 7
RsaI GTAC 2 cut(s) 193, 240
RsaNI GTAC 2 cut(s) 192, 239
SaqAI TTAA 3 cut(s) 207, 321, 368
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 3 cut(s) 98, 317, 335
ScrFI CCNGG 2 cut(s) 37, 236
SetI ASST 3 cut(s) 139, 183, 294
SfaNI GCATC 1 cut(s) 52
SmiI ATTTAAAT 1 cut(s) 369
Sse9I AATT 3 cut(s) 13, 140, 364
SspMI CTAG 2 cut(s) 42, 391
StyD4I CCNGG 2 cut(s) 35, 234
StyI CCWWGG 1 cut(s) 93
SwaI ATTTAAAT 1 cut(s) 369
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 329
TasI AATT 3 cut(s) 13, 140, 364
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 207, 321, 368
Tru9I TTAA 3 cut(s) 207, 321, 368
XapI RAATTY 1 cut(s) 364
XspI CTAG 2 cut(s) 42, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.