Rh5AG386100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0032805
Physical Location & Seq
Forward (+)
66721893 .. 66739889
17997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG386100.1

Sequence Viewer

Length: 417 bp
ATGATGCCCGTGTCAGGAAGTTACTCTCTGACTGTAAATTGCTCTGTTTGTGGTTCAGGAGACCATAACAACCGGACCTGCCCTATGGAACTAGCCAAGAAGGCTAGGAATGCTTCAGAAGATGGGGTGTCAGGGAGTTATTCTGTGACTGTAAATTGCTCTGTTTGCGGTTCAGGAGTCCATAACAACAGGAACTGGCCTATGGAACTAGCCAAGAAGGCTAGGAATGCTTCAGAAGCTGAGAATAATGGTGAACAAGGCGGAATGAATGTCAATGTGGATAACCAAGGGTCAAATCCTGTCAACGTGTGTGTTCAAAACCATGGCAGCAGCTCTGTTCATGTTCAACAGCAAACAAAACAAATGACTGCAAAGGAGCAGGTCAGCAGAGCACCAAAGAGATCAAGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.74

Weight (kDa)

9.02

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0032805)

Species Orthologous Gene IDs
rosa_samantha Rh5AG386100 Rh5DG413500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 86, 370
AciI CCGC 2 cut(s) 168, 261
AcuI CTGAAG 2 cut(s) 99, 216
AfiI CCNNNNNNNGG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 317, 347
AluBI AGCT 2 cut(s) 239, 333
AluI AGCT 2 cut(s) 239, 333
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 54
AlwNI CAGNNNCTG 2 cut(s) 195, 239
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 327, 330
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 339, 342
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 4 cut(s) 92, 105, 209, 222
BfuAI ACCTGC 2 cut(s) 86, 370
BglI GCCNNNNNGGC 2 cut(s) 101, 218
BisI GCNGC 2 cut(s) 328, 331
BlsI GCNGC 2 cut(s) 329, 332
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 286, 322
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 286, 322
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 339, 342
BshFI GGCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 54
BsmI GAATGC 2 cut(s) 115, 232
BsnI GGCC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 401
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 2 cut(s) 168, 261
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 232
BspMI ACCTGC 2 cut(s) 86, 370
BspTNI GGTCTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 286, 322
BssMI GATC 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 286, 322
Bst4CI ACNGT 2 cut(s) 34, 151
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 322
BstKTI GATC 1 cut(s) 404
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 401
BstMWI GCNNNNNNNGC 6 cut(s) 101, 110, 165, 218, 227, 236
BstV1I GCAGC 2 cut(s) 339, 342
BsuRI GGCC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 322
BveI ACCTGC 2 cut(s) 86, 370
CaiI CAGNNNCTG 2 cut(s) 195, 239
Cfr13I GGNCC 1 cut(s) 75
CviAII CATG 2 cut(s) 323, 341
CviJI RGCY 7 cut(s) 95, 104, 199, 212, 221, 239, 333
CviKI_1 RGCY 7 cut(s) 95, 104, 199, 212, 221, 239, 333
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 403
DpnII GATC 1 cut(s) 401
EciI GGCGGA 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 286, 322
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 99, 216
EcoT14I CCWWGG 2 cut(s) 286, 322
ErhI CCWWGG 2 cut(s) 286, 322
FaeI CATG 2 cut(s) 326, 344
FaiI YATR 6 cut(s) 66, 86, 183, 203, 324, 342
FatI CATG 2 cut(s) 322, 340
Fnu4HI GCNGC 2 cut(s) 328, 331
Fsp4HI GCNGC 2 cut(s) 328, 331
FspBI CTAG 4 cut(s) 92, 105, 209, 222
GluI GCNGC 2 cut(s) 328, 331
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 73
Hin1II CATG 2 cut(s) 326, 344
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 254, 304
Hpy188I TCNGA 3 cut(s) 30, 118, 235
Hpy188III TCNNGA 4 cut(s) 15, 57, 174, 405
Hpy8I GTNNAC 2 cut(s) 254, 304
HpyAV CCTTC 2 cut(s) 94, 211
HpyCH4III ACNGT 2 cut(s) 34, 151
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 110, 165, 218, 227, 236
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 2 cut(s) 326, 344
Kzo9I GATC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 9 cut(s) 42, 86, 91, 117, 159, 175, 181, 312, 365
Lsp1109I GCAGC 2 cut(s) 339, 342
MaeI CTAG 4 cut(s) 92, 105, 209, 222
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 20, 145
MalI GATC 1 cut(s) 403
MboI GATC 1 cut(s) 401
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 2 cut(s) 37, 154
MlyI GAGTC 1 cut(s) 186
MspI CCGG 1 cut(s) 73
Mva1269I GAATGC 2 cut(s) 115, 232
MwoI GCNNNNNNNGC 6 cut(s) 101, 110, 165, 218, 227, 236
NcoI CCATGG 1 cut(s) 322
NdeII GATC 1 cut(s) 401
NlaIII CATG 2 cut(s) 326, 344
NmuCI GTSAC 1 cut(s) 145
PctI GAATGC 2 cut(s) 115, 232
PkrI GCNGC 2 cut(s) 329, 332
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 195, 239
SatI GCNGC 2 cut(s) 328, 331
Sau3AI GATC 1 cut(s) 401
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 394
SetI ASST 5 cut(s) 80, 241, 309, 335, 384
SinI GGWCC 1 cut(s) 75
Sse9I AATT 2 cut(s) 37, 154
SsiI CCGC 2 cut(s) 168, 261
SspMI CTAG 4 cut(s) 92, 105, 209, 222
StyI CCWWGG 2 cut(s) 286, 322
TaaI ACNGT 2 cut(s) 34, 151
TaiI ACGT 1 cut(s) 309
TasI AATT 2 cut(s) 37, 154
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 327, 330
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 281, 329
VpaK11BI GGWCC 1 cut(s) 75
XspI CTAG 4 cut(s) 92, 105, 209, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.