Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0032805

Physical Location & Seq

Genomic Coordinates Forward (+)

65714792 .. 65737715

Gene Structure 22924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG413500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAAGCTGCAACAAAACAGATGATGGAGTTAGCATTGATGTGTATAGATGCTAGTGAACAAAGACCACACATGAAGACTGTTGTTCAAGTGCTCGAACGGATTCAAGCGAGAGAAACTAGCCATTTTCACATCGAAGTCGAGGAGATAGGTGCTGTGACTCTTGGAGTCCATAACAACAGGAACTGGCCTATGGAACTAGCCAAGAAGGCTAGGAATGCTTCAGAAGCTGAGAATAATGGTGAACAAGGCGGAATGAATGTCAATGTGGATAACCAAGGGTCAAATCCTGTCAACGTGTGTGTTCAAAACCATGGCAGCAGCTCTGTTCATGTTCAACAGCAAACAAAACAAATGACTGCAAAGGAGCAGGTTCATATAGATGATGACCGAGGAAATCAGCCAAAGAAGCCACCACAAAATACGCGTGTTAACTTTTCACAGACAACAATTGACACTCATATGGAGCATTTTGAACAACTTGAGACTACAGGCTTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

167

Amino Acids

18.77

Weight (kDa)

5.82

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0032805)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG386100 Rh5DG413500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
AccII	CGCG	1 cut(s)	427
AciI	CCGC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	207
AflIII	ACRYGT	2 cut(s)	297, 425
AgsI	TTSAA	5 cut(s)	89, 107, 308, 338, 476
AluBI	AGCT	3 cut(s)	8, 230, 324
AluI	AGCT	3 cut(s)	8, 230, 324
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	479
AlwNI	CAGNNNCTG	2 cut(s)	186, 230
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	8, 318, 321
Asp700I	GAANNNNTTC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	330, 333
BccI	CCATC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	4 cut(s)	54, 120, 200, 213
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	361
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	9, 319, 322
BlsI	GCNGC	3 cut(s)	10, 320, 323
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	277, 313, 391
Bse1I	ACTGG	1 cut(s)	191
BseDI	CCNNGG	3 cut(s)	277, 313, 391
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	330, 333
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	277, 313, 391
BssT1I	CCWWGG	2 cut(s)	277, 313
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 218, 227, 409
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	330, 333
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	2 cut(s)	186, 230
CviAII	CATG	3 cut(s)	73, 314, 332
DdeI	CTNAG	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	277, 313
Eco57I	CTGAAG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	277, 313
ErhI	CCWWGG	2 cut(s)	277, 313
FaeI	CATG	3 cut(s)	76, 317, 335
FatI	CATG	3 cut(s)	72, 313, 331
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	9, 319, 322
Fsp4HI	GCNGC	3 cut(s)	9, 319, 322
FspBI	CTAG	4 cut(s)	54, 120, 200, 213
GluI	GCNGC	3 cut(s)	9, 319, 322
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	76, 317, 335
HincII	GTYRAC	2 cut(s)	295, 433
HindII	GTYRAC	2 cut(s)	295, 433
HinfI	GANTC	3 cut(s)	103, 160, 168
HpaI	GTTAAC	1 cut(s)	433
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	4 cut(s)	59, 245, 295, 433
Hpy188I	TCNGA	1 cut(s)	226
Hpy8I	GTNNAC	4 cut(s)	59, 245, 295, 433
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	4, 11, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 218, 227, 409
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	76, 317, 335
KspAI	GTTAAC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	367, 466
LpnPI	CCDG	5 cut(s)	166, 172, 303, 356, 477
Lsp1109I	GCAGC	2 cut(s)	330, 333
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	4 cut(s)	54, 120, 200, 213
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	88
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	450
MluI	ACGCGT	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	154, 177
MnlI	CCTC	2 cut(s)	136, 386
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	3 cut(s)	40, 381, 461
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	4 cut(s)	209, 218, 227, 409
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	462
NlaIII	CATG	3 cut(s)	76, 317, 335
NmuCI	GTSAC	1 cut(s)	157
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	10, 320, 323
PleI	GAGTC	2 cut(s)	154, 176
PpsI	GAGTC	2 cut(s)	154, 176
PstNI	CAGNNNCTG	2 cut(s)	186, 230
RseI	CAYNNNNRTG	3 cut(s)	40, 381, 461
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	9, 319, 322
SchI	GAGTC	2 cut(s)	154, 177
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	10, 154, 232, 300, 326, 375
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	3 cut(s)	40, 381, 461
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	4 cut(s)	54, 120, 200, 213
StyI	CCWWGG	2 cut(s)	277, 313
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	96, 135, 141
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	8, 318, 321
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	89, 272, 320, 365
TspGWI	ACGGA	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	4 cut(s)	54, 120, 200, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.