Rh5AG386300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0030993
Physical Location & Seq
Forward (+)
66810989 .. 66813685
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG386300.1

Sequence Viewer

Length: 639 bp
ATGATCATTAACACAATCAATTACCAGAACCAAACTCTTCACGTCTCATACAATAAACTTCATGCATTCGGTGGAGATGCTAGTTGTATTGGACTTCCCAGAAACTTAACCTTACCAAATGATCCGTATGAGCTCGCTCCAAATCAAAAGGAATTCATATTGCTCTACTATTGCAACTCTTCTTTGGCTGGTGAGTCGTTTTCAGAGTACAGGCTTGGGTTTGGTTACTCTGTGCTATACTCTGAAGGACCCTTAATTAGGACGTCAACAGTTCTGGGCCTGACCAAGGATGATCCACAGTTTGGAAATGCGCTTGAGAAGTATGGAAAAGAAGCGATGATGGTTGAAGGGGTATATGCAAATGTTGACAACGTCGCGGGAATAAAAGAGGGGCTGAGAGCAGGTTTTGTGCTAAACTGGTGTTTCTGGGTTCTTTTGAATTTTGTGTCTGGGTTCTTGAATATGGGAGTTGGTGATGAATGTTTGGGAAATTTGAATGGGTTTTGTGAGAGATTTCGAGGAGTTTTCGAGAATGTGGATGGTGTATTTGTTAGTAGAGCAAATCAATTGAGTTGGGTTTATGTTAGGTATGAATTGGAATGTGGTGACAATGAGATTGGGAGTGAGACAGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

4.63

Isoelectric Point (pI)

18.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030993)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035282
rosa_samantha Rh5AG386300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 377
AciI CCGC 1 cut(s) 377
AclWI GGATC 2 cut(s) 116, 287
AcsI RAATTY 3 cut(s) 152, 439, 490
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 258, 286, 302
AgsI TTSAA 4 cut(s) 347, 439, 460, 496
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 2 cut(s) 133, 632
AluI AGCT 2 cut(s) 133, 632
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 49, 620
AlwI GGATC 2 cut(s) 116, 287
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 3 cut(s) 152, 439, 490
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 248, 277
AsuHPI GGTGA 3 cut(s) 203, 485, 617
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 2 cut(s) 334, 533
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 49, 620
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 248
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 248, 277
BmiI GGNNCC 1 cut(s) 250
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 286, 302
Bse1I ACTGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 295, 544
BseLI CCNNNNNNNGG 3 cut(s) 258, 286, 302
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 258, 286, 302
BsmAI GTCTC 2 cut(s) 49, 620
BsmBI CGTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 3, 121, 292
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 2 cut(s) 116, 287
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 3, 121, 292
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 271, 300
Bst6I CTCTTC 2 cut(s) 42, 184
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 395
BstENI CCTNNNNNAGG 2 cut(s) 256, 284
BstF5I GGATG 2 cut(s) 295, 544
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 6, 124, 295
BstMAI GTCTC 2 cut(s) 49, 620
BstMBI GATC 3 cut(s) 3, 121, 292
BstUI CGCG 1 cut(s) 377
BsuRI GGCC 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 295, 544
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 248, 277
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 133, 188, 214, 279, 394, 632
CviKI_1 RGCY 6 cut(s) 133, 188, 214, 279, 394, 632
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 5, 123, 294
DpnII GATC 3 cut(s) 3, 121, 292
Eam1104I CTCTTC 2 cut(s) 42, 184
EarI CTCTTC 2 cut(s) 42, 184
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 2 cut(s) 256, 284
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 65
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 302, 551
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 279
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 2 cut(s) 267, 367
HindII GTYRAC 2 cut(s) 267, 367
HinfI GANTC 1 cut(s) 194
HphI GGTGA 3 cut(s) 203, 485, 617
Hpy166II GTNNAC 2 cut(s) 267, 367
Hpy188I TCNGA 2 cut(s) 205, 244
Hpy188III TCNNGA 2 cut(s) 457, 529
Hpy8I GTNNAC 2 cut(s) 267, 367
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 239, 341
HpyCH4III ACNGT 2 cut(s) 271, 300
HpyCH4IV ACGT 3 cut(s) 42, 263, 372
HpyCH4V TGCA 3 cut(s) 65, 174, 359
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 3 cut(s) 42, 263, 372
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 121, 292
LmnI GCTCC 1 cut(s) 142
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 42, 263, 372
MaeIII GTNAC 2 cut(s) 224, 605
MalI GATC 3 cut(s) 5, 123, 294
MboI GATC 3 cut(s) 3, 121, 292
MboII GAAGA 2 cut(s) 29, 171
MfeI CAATTG 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 7 cut(s) 19, 152, 255, 439, 490, 566, 593
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 2 cut(s) 382, 512
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 3 cut(s) 9, 107, 254
MunI CAATTG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 65
MvnI CGCG 1 cut(s) 377
NdeII GATC 3 cut(s) 3, 121, 292
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 605
NsiI ATGCAT 1 cut(s) 67
PctI GAATGC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 302
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 248, 277
PspPPI RGGWCCY 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 9, 107, 254
Sau3AI GATC 3 cut(s) 3, 121, 292
Sau96I GGNCC 2 cut(s) 248, 277
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 135
SetI ASST 8 cut(s) 45, 113, 135, 266, 375, 406, 590, 634
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 7 cut(s) 19, 152, 255, 439, 490, 566, 593
SsiI CCGC 1 cut(s) 377
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 271, 300
TaiI ACGT 3 cut(s) 45, 266, 375
TaqI TCGA 2 cut(s) 517, 528
TasI AATT 7 cut(s) 19, 152, 255, 439, 490, 566, 593
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 3 cut(s) 9, 107, 254
Tru9I TTAA 3 cut(s) 9, 107, 254
TseFI GTSAC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 4 cut(s) 50, 145, 492, 606
TspGWI ACGGA 1 cut(s) 114
Tth111I GACNNNGTC 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 248
XagI CCTNNNNNAGG 2 cut(s) 256, 284
XapI RAATTY 3 cut(s) 152, 439, 490
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.