Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0025465

Physical Location & Seq

Genomic Coordinates Forward (+)

79054812 .. 79055180

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAGTTTTGGTATTTTCATACAATCATCTTGCCCTCTCACGCTATGTCTGTGCTTGAAGATGAGTGCACGGTAGCTATGGATGAAGAATTGAATCTGGAAGAGCTTGATTCGGTTTCTCGTGCTGCCAAAGGACTCGAGGAGACTAATATTACCACCATCAATACTATTCCTGATGAAGCTGAGATGAAGCCCTCTCCTTATAATGTGCTTTTTGTGGGTAATCTGAATCCACGCTTTACTGACGATGAGTTGTTGCACCATGTTTTCTCATATTTTGGAGGAAGGGCAACTGTGAAATCGACAGCTACAATCCATGACGGCAACACTGAAAAAAGATCATGCCATGCCTTCGTACGTAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

4.97

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0025465)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000431.1_g000002
rosa_samantha	Rh5AG461900 Rh5CG504300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	59, 94
AluBI	AGCT	4 cut(s)	77, 106, 182, 308
AluI	AGCT	4 cut(s)	77, 106, 182, 308
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	359
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	137
BsiWI	CGTACG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	96
BssMI	GATC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	73, 295
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	71
BstSNI	TACGTA	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	4 cut(s)	263, 317, 342, 347
CviJI	RGCY	5 cut(s)	77, 106, 182, 193, 308
CviKI_1	RGCY	5 cut(s)	77, 106, 182, 193, 308
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco105I	TACGTA	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	137
FaeI	CATG	4 cut(s)	266, 320, 345, 350
FaiI	YATR	9 cut(s)	21, 47, 80, 204, 264, 274, 318, 343, 348
FatI	CATG	4 cut(s)	262, 316, 341, 346
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	266, 320, 345, 350
HinfI	GANTC	4 cut(s)	94, 110, 135, 229
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	2 cut(s)	98, 173
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	279, 361
HpyCH4III	ACNGT	2 cut(s)	73, 295
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	4, 69, 259
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	266, 320, 345, 350
Kzo9I	GATC	1 cut(s)	338
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	83, 186
Lsp1109I	GCAGC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	358
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	3 cut(s)	71, 98, 113
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	2 cut(s)	89, 363
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	46, 133, 205, 275
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	4 cut(s)	266, 320, 345, 350
PaeR7I	CTCGAG	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	94, 110, 229
Pfl23II	CGTACG	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	204
PspLI	CGTACG	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	137
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	79, 108, 184, 310, 361
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SnaBI	TACGTA	1 cut(s)	359
Sse9I	AATT	2 cut(s)	89, 363
SspI	AATATT	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	73, 295
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	138, 302
TasI	AATT	2 cut(s)	89, 363
TfiI	GAWTC	3 cut(s)	94, 110, 229
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	8, 99, 192, 203
TspRI	CASTG	1 cut(s)	334
VneI	GTGCAC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	363
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.