Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025465

Physical Location & Seq

Genomic Coordinates Forward (+)

70082222 .. 70082731

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG504300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTGTGCTTGAAGATGAGTGCACGGTAGCTATGGATGAAGAATTGAATCCGGAAGAGCTTGATTCGGTTTCTCGTGCTGCCAAAGGACTCGAGGAGACTAATATTACCACCATCAATACTATTCCTGATGAAGCTGAGATGAAGCCCTCTCCTTATAATGTGCTTTTTGTGGGTAATCTGAATCCACGCTTTACTGACGATGAGTTGTTGCGCCATGTTTTCTCATATTTTGGAGGAAGGGCAACGGTGAAATCGACAGCTACAATCCATGACGGCAACACTGAAAAAAGATCACGCCATGCCTTCGTAGAATTTGAAACCAAACAGGCATGTGAACAATCATTTTTACGGATAAGAGAAAGAAACACTGAGATTGATGGCTATAAAATATGTCTGGAATATAATGCATTTAGTCCCGGTGTTGCAAAGCTTTGGCCCAACCACAATCAGCAAAAGGGCAGGAGCTCTGACGCCTCCCTAAATAATGAAGCCAAAATAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

169

Amino Acids

19.15

Weight (kDa)

4.88

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 113	2.7e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Orthologous Genes (Group: OG0025465)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000431.1_g000002
rosa_samantha	Rh5AG461900 Rh5CG504300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	14, 49, 320
AluBI	AGCT	6 cut(s)	32, 61, 137, 263, 433, 468
AluI	AGCT	6 cut(s)	32, 61, 137, 263, 433, 468
Alw21I	GWGCWC	2 cut(s)	26, 470
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	1 cut(s)	437
ApaLI	GTGCAC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	26, 470
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	122, 374
BceAI	ACGGC	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	52
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	129, 363
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	26, 470
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	53, 420
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	26, 470
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	130, 364
BspEI	TCCGGA	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	51
BssMI	GATC	1 cut(s)	293
BssNI	GRCGYC	1 cut(s)	474
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	28, 250
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	138, 372
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	282, 369
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	438
CseI	GACGC	1 cut(s)	482
CviAII	CATG	4 cut(s)	218, 272, 302, 333
DdeI	CTNAG	2 cut(s)	138, 372
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	4 cut(s)	221, 275, 305, 336
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	4 cut(s)	217, 271, 301, 332
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	2 cut(s)	53, 420
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	221, 275, 305, 336
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	49, 65, 90, 184
HpaII	CCGG	2 cut(s)	53, 420
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	24, 338
Hpy188I	TCNGA	2 cut(s)	183, 472
Hpy188III	TCNNGA	3 cut(s)	53, 128, 398
Hpy8I	GTNNAC	2 cut(s)	24, 338
HpyAV	CCTTC	2 cut(s)	234, 316
HpyCH4III	ACNGT	2 cut(s)	28, 250
HpyCH4V	TGCA	3 cut(s)	24, 410, 428
HpyF3I	CTNAG	2 cut(s)	138, 372
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	221, 275, 305, 336
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	6 cut(s)	66, 141, 314, 383, 433, 448
Lsp1109I	GCAGC	1 cut(s)	67
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	3 cut(s)	26, 53, 68
MhlI	GDGCHC	2 cut(s)	26, 470
MluCI	AATT	2 cut(s)	44, 314
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	88, 160, 230, 487, 496
Mph1103I	ATGCAT	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	52
MspI	CCGG	2 cut(s)	53, 420
MspR9I	CCNGG	1 cut(s)	420
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	4 cut(s)	221, 275, 305, 336
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	336
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	49, 65, 184
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	438
PspXI	VCTCGAGB	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	26, 470
SetI	ASST	6 cut(s)	34, 63, 139, 265, 435, 470
Sfr274I	CTCGAG	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	44, 314
SspI	AATATT	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	28, 250
TaqI	TCGA	2 cut(s)	93, 257
TasI	AATT	2 cut(s)	44, 314
TfiI	GAWTC	3 cut(s)	49, 65, 184
TscAI	CASTG	2 cut(s)	289, 376
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	54, 147, 158, 504
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	2 cut(s)	289, 376
VneI	GTGCAC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.