Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0032850

Physical Location & Seq

Genomic Coordinates Forward (+)

92034928 .. 92099343

Gene Structure 64416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCCGTAACGGACGACGATCTGGCTCTGCTGGCCGAGTCGTTCCCCGGGTTCAAGGACCTCGTTCTGGTTTGCTGTGATGGATTTGGGACCAGTGGCCTCGCTATGGTCGCCAGTAAGTGCAGACAGCTTAGGGTGCTTGATTTGATTGAATCTGAGGTTATCGACGACGATGTGGATTGGATATGTTGTTTTCCTGAGAGCCAAACCTGTCTGGAGTCTCTGATGTTTGATTGCGTAGAATGCCACGTAAATTTCGAGGCATTGGAGAGGCTGGTGATTAGGTCAACTTCCTTGAAGAAACTTAGGTTGAACCGCTATGTTTCAATTGGGCAGCTACACCGCTTGATGGTTAGAGCTCCACAGCTCACTCACCTAAGAACGGGCTCATTCAGTTCATTGGAGAGCAATGCTCAGGGGGATCAAGAACTGGATTGTGTCTCTGCTTTTGCTGCTTGCAAATCCATAGTCTGTCTATCTGGGTTCAATGAGATATTTGTGGATCAGTTGCCTGCAATTTACCCCGTCTGTGCTAATCTGACCAATCTGAATTTCAGCTATGCAAATATCAGTGCAGAACAACTTAAACCAGTCATACGAAACTGCCACAAGCTCCAGACTTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000822 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010011 GO:0010033 GO:0019005 GO:0023052 GO:0031461 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

209

Amino Acids

23.34

Weight (kDa)

4.86

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032850)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG536000 Rh7AG474200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	316, 343
AclWI	GGATC	2 cut(s)	429, 510
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	253, 550
AfiI	CCNNNNNNNGG	4 cut(s)	67, 106, 349, 382
AgsI	TTSAA	6 cut(s)	55, 152, 298, 313, 327, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	6 cut(s)	130, 337, 359, 367, 558, 613
AluI	AGCT	6 cut(s)	130, 337, 359, 367, 558, 613
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	2 cut(s)	225, 445
AlwI	GGATC	2 cut(s)	429, 510
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	33, 97
ApeKI	GCWGC	2 cut(s)	334, 452
ApoI	RAATTY	2 cut(s)	253, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	453, 485
AspS9I	GGNCC	2 cut(s)	58, 90
AsuC2I	CCSGG	2 cut(s)	48, 49
AsuHPI	GGTGA	2 cut(s)	289, 365
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	58, 90
BanII	GRGCYC	2 cut(s)	361, 389
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	346, 439
BccI	CCATC	2 cut(s)	74, 343
BcnI	CCSGG	2 cut(s)	48, 49
BcoDI	GTCTC	2 cut(s)	225, 445
BisI	GCNGC	2 cut(s)	335, 453
BlsI	GCNGC	2 cut(s)	336, 454
Bme1390I	CCNGG	2 cut(s)	48, 49
Bme18I	GGWCC	2 cut(s)	58, 90
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	58, 90
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	48, 49
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BpmI	CTGGAG	2 cut(s)	236, 599
Bpu10I	CCTNAGC	2 cut(s)	131, 414
BpuMI	CCSGG	2 cut(s)	48, 49
BsaAI	YACGTR	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	46, 47
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 106, 349, 382
Bse1I	ACTGG	4 cut(s)	93, 114, 435, 590
Bse3DI	GCAATG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	46, 47
BseLI	CCNNNNNNNGG	4 cut(s)	67, 106, 349, 382
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	147, 189, 428
BseNI	ACTGG	4 cut(s)	93, 114, 435, 590
BseXI	GCAGC	2 cut(s)	346, 439
BsgI	GTGCAG	2 cut(s)	142, 594
BshFI	GGCC	2 cut(s)	35, 99
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	4 cut(s)	67, 106, 349, 382
BsmAI	GTCTC	2 cut(s)	225, 445
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	35, 99
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	361, 389
Bsp143I	GATC	3 cut(s)	19, 421, 502
BspACI	CCGC	2 cut(s)	316, 343
BspANI	GGCC	2 cut(s)	35, 99
BspCNI	CTCAG	3 cut(s)	148, 190, 427
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	429, 510
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	93, 114, 435, 590
BssECI	CCNNGG	2 cut(s)	46, 47
BssMI	GATC	3 cut(s)	19, 421, 502
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	33, 457, 513
BstDEI	CTNAG	6 cut(s)	131, 156, 198, 305, 377, 414
BstKTI	GATC	3 cut(s)	22, 424, 505
BstMAI	GTCTC	2 cut(s)	225, 445
BstMBI	GATC	3 cut(s)	19, 421, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 110, 136, 243, 452
BstSCI	CCNGG	2 cut(s)	46, 47
BstV1I	GCAGC	2 cut(s)	346, 439
BsuRI	GGCC	2 cut(s)	35, 99
BtsIMutI	CAGTG	2 cut(s)	100, 577
Cac8I	GCNNGC	3 cut(s)	33, 457, 513
Cfr13I	GGNCC	2 cut(s)	58, 90
Cfr9I	CCCGGG	1 cut(s)	47
DdeI	CTNAG	6 cut(s)	131, 156, 198, 305, 377, 414
DpnI	GATC	3 cut(s)	21, 423, 504
DpnII	GATC	3 cut(s)	19, 421, 502
EaeI	YGGCCR	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	361, 389
Eco47I	GGWCC	2 cut(s)	58, 90
Eco53kI	GAGCTC	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	361, 389
FaiI	YATR	6 cut(s)	107, 187, 321, 467, 561, 596
FaqI	GGGAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	335, 453
FriOI	GRGCYC	2 cut(s)	361, 389
Fsp4HI	GCNGC	2 cut(s)	335, 453
GluI	GCNGC	2 cut(s)	335, 453
GsuI	CTGGAG	2 cut(s)	236, 599
HaeIII	GGCC	2 cut(s)	35, 99
HapII	CCGG	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	38, 152, 218
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	289, 365
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	4 cut(s)	157, 225, 540, 549
Hpy188III	TCNNGA	4 cut(s)	197, 215, 425, 616
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	3 cut(s)	20, 170, 173
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	123, 459, 515, 563, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 110, 136, 243, 452
HpyF3I	CTNAG	6 cut(s)	131, 156, 198, 305, 377, 414
HpySE526I	ACGT	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	19, 421, 502
LmnI	GCTCC	2 cut(s)	364, 618
Lsp1109I	GCAGC	2 cut(s)	346, 439
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	21, 423, 504
MboI	GATC	3 cut(s)	19, 421, 502
MboII	GAAGA	1 cut(s)	310
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	361, 389
MluCI	AATT	4 cut(s)	253, 327, 516, 550
MlyI	GAGTC	2 cut(s)	47, 227
MnlI	CCTC	5 cut(s)	71, 110, 151, 253, 264
MseI	TTAA	1 cut(s)	585
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	48, 49
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	32, 110, 136, 243, 452
NciI	CCSGG	2 cut(s)	48, 49
NdeII	GATC	3 cut(s)	19, 421, 502
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	336, 454
PleI	GAGTC	2 cut(s)	46, 226
PpsI	GAGTC	2 cut(s)	46, 226
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	58, 90
PspPPI	RGGWCCY	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	335, 453
Sau3AI	GATC	3 cut(s)	19, 421, 502
Sau96I	GGNCC	2 cut(s)	58, 90
SchI	GAGTC	2 cut(s)	47, 227
ScrFI	CCNGG	2 cut(s)	48, 49
SduI	GDGCHC	2 cut(s)	361, 389
SinI	GGWCC	2 cut(s)	58, 90
SmaI	CCCGGG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	253, 327, 516, 550
SsiI	CCGC	2 cut(s)	316, 343
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	46, 47
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	165, 258
TasI	AATT	4 cut(s)	253, 327, 516, 550
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	100, 577
TseI	GCWGC	2 cut(s)	334, 452
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	26
TspMI	CCCGGG	1 cut(s)	47
TspRI	CASTG	2 cut(s)	100, 577
VpaK11BI	GGWCC	2 cut(s)	58, 90
XapI	RAATTY	2 cut(s)	253, 550
XmaI	CCCGGG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.