Rh7AG474200

Transport inhibitor response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0032850
Physical Location & Seq
Forward (+)
65782917 .. 65784171
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG474200.1

Sequence Viewer

Length: 789 bp
ATGTCGGCCCATTGGGGCGCCCACTTTGGGCCCTGGGTCTCCGCCATGGCCAAGGCTTACCCTTGGCTCGAGAAAGTCTATCTCAAGCGCATGTCCGTAACGGACGACGATCTGGCTCTGCTGGCCGAGTCGTTCCCCAGGTTCAAGGGCCTCGTTCTGGTTTGCTGTGATGGATTTGGGACCAGTGGCCTCGCTGTGGTCGCCAGTAAGTGCAGACAGCTTAGGGTGCTTGATTTGATTGAATCTGAGGTTATCGACGACGATGTGGATTGGATATGTTGTTTTCCTGAGAGCCAAACCTGTCTGGAGTCTCTGATGTTTGATTGCGTAGAATGCCACGTAAATTTCGAGGCATTGGAGAGGCTGGTGATTAGGTCAACTTCCTTGAAGAAACTTAGGTTGAACCGCTATGTTTCAATTGGGCAGCTACACCGCTTGATGGTTAGAGCTCCACAGCTCACTCACCTAAGAACGGGCTCATTCAGTTCATTGGAGGGCAATGCTCAGGGGGATCAAGAACTGGATTGTGTCTCTGCTTTTGCTGCTTGCAAATCCATAGTCTGTCTATCTGGGTTCAATGAGATATTTGTGGATCAGTTGCCTGCAATTTACCCCGTCTGTGCTAATCTGACCAATCTGAATTTCAGCTATGCAAATATCAGTGCAGAACAACTTAAACCAGTCATACGAAACTGCCACAAGCTCCAGACTTTCTGGGTACTCGATTCAGTATGTGATGAAGGCCTTAAGGCAGTGGCTGCAATTAGCAAGGAACTGCGTGAACTTTAG

Protein Analysis

262

Amino Acids

29.26

Weight (kDa)

5.55

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_inhibit PF18791 3 - 28 7.9e-09 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032850)

Species Orthologous Gene IDs
rosa_samantha Rh5AG536000 Rh7AG474200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 3 cut(s) 42, 406, 433
AclWI GGATC 2 cut(s) 519, 600
AcoI YGGCCR 2 cut(s) 48, 123
AcsI RAATTY 2 cut(s) 343, 640
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 439, 472
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 6 cut(s) 145, 242, 388, 403, 417, 577
AjnI CCWGG 2 cut(s) 32, 137
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 6 cut(s) 220, 427, 449, 457, 648, 703
AluI AGCT 6 cut(s) 220, 427, 449, 457, 648, 703
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 3 cut(s) 43, 315, 535
AlwI GGATC 2 cut(s) 519, 600
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 7 cut(s) 6, 29, 48, 123, 148, 187, 742
ApaI GGGCCC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 424, 542, 758
ApoI RAATTY 2 cut(s) 343, 640
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AspLEI GCGC 2 cut(s) 20, 90
AspS9I GGNCC 5 cut(s) 7, 29, 30, 148, 180
AsuHPI GGTGA 2 cut(s) 379, 455
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 33, 451, 479
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 436, 529, 745
BccI CCATC 2 cut(s) 164, 433
BciT130I CCWGG 2 cut(s) 34, 139
BcoDI GTCTC 3 cut(s) 43, 315, 535
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 3 cut(s) 425, 543, 759
BlsI GCNGC 3 cut(s) 426, 544, 760
Bme1390I CCNGG 2 cut(s) 34, 139
Bme18I GGWCC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 5 cut(s) 7, 29, 30, 148, 180
BmiI GGNNCC 3 cut(s) 19, 31, 181
BmrFI CCNGG 2 cut(s) 34, 139
BpmI CTGGAG 2 cut(s) 326, 689
Bpu10I CCTNAGC 2 cut(s) 221, 504
BpuEI CTTGAG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 6 cut(s) 32, 33, 45, 51, 62, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 157, 196, 439, 472
Bse1I ACTGG 4 cut(s) 183, 204, 525, 680
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 2 cut(s) 34, 139
BseDI CCNNGG 6 cut(s) 32, 33, 45, 51, 62, 137
BseLI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 439, 472
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 3 cut(s) 237, 279, 518
BseNI ACTGG 4 cut(s) 183, 204, 525, 680
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 3 cut(s) 436, 529, 745
BsgI GTGCAG 2 cut(s) 232, 684
BshFI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 744
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 5 cut(s) 27, 157, 196, 439, 472
BsmAI GTCTC 3 cut(s) 43, 315, 535
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 744
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 68
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 33, 451, 479
Bsp143I GATC 3 cut(s) 109, 511, 592
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 42, 406, 433
BspANI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 744
BspCNI CTCAG 3 cut(s) 238, 280, 517
BspLI GGNNCC 3 cut(s) 19, 31, 181
BspPI GGATC 2 cut(s) 519, 600
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 746
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 4 cut(s) 183, 204, 525, 680
BssECI CCNNGG 6 cut(s) 32, 33, 45, 51, 62, 137
BssMI GATC 3 cut(s) 109, 511, 592
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 3 cut(s) 45, 51, 62
Bst2UI CCWGG 2 cut(s) 34, 139
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 123, 547, 603
BstDEI CTNAG 6 cut(s) 221, 246, 288, 395, 467, 504
BstDSI CCRYGG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 90
BstKTI GATC 3 cut(s) 112, 514, 595
BstMAI GTCTC 3 cut(s) 43, 315, 535
BstMBI GATC 3 cut(s) 109, 511, 592
BstMWI GCNNNNNNNGC 6 cut(s) 122, 200, 226, 333, 542, 758
BstNI CCWGG 2 cut(s) 34, 139
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 32, 137
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 436, 529, 745
BsuRI GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 744
BtgI CCRYGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 3 cut(s) 190, 667, 759
Cac8I GCNNGC 3 cut(s) 123, 547, 603
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 2 cut(s) 20, 90
Cfr13I GGNCC 5 cut(s) 7, 29, 30, 148, 180
Csp6I GTAC 1 cut(s) 719
CviAII CATG 2 cut(s) 46, 91
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 6 cut(s) 221, 246, 288, 395, 467, 504
DinI GGCGCC 1 cut(s) 19
DpnI GATC 3 cut(s) 111, 513, 594
DpnII GATC 3 cut(s) 109, 511, 592
EaeI YGGCCR 2 cut(s) 48, 123
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 449
Eco130I CCWWGG 3 cut(s) 45, 51, 62
Eco147I AGGCCT 1 cut(s) 744
Eco24I GRGCYC 3 cut(s) 33, 451, 479
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 30, 148
EcoRII CCWGG 2 cut(s) 32, 137
EcoT14I CCWWGG 3 cut(s) 45, 51, 62
EcoT38I GRGCYC 3 cut(s) 33, 451, 479
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 3 cut(s) 45, 51, 62
FaeI CATG 2 cut(s) 49, 94
FaiI YATR 8 cut(s) 47, 92, 277, 411, 557, 651, 686, 733
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 45, 90
Fnu4HI GCNGC 3 cut(s) 425, 543, 759
FriOI GRGCYC 3 cut(s) 33, 451, 479
Fsp4HI GCNGC 3 cut(s) 425, 543, 759
GlaI GCGC 2 cut(s) 19, 89
GluI GCNGC 3 cut(s) 425, 543, 759
GsuI CTGGAG 2 cut(s) 326, 689
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 7 cut(s) 8, 31, 50, 125, 150, 189, 744
HhaI GCGC 2 cut(s) 20, 90
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 49, 94
Hin6I GCGC 2 cut(s) 18, 88
HinP1I GCGC 2 cut(s) 18, 88
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 4 cut(s) 128, 242, 308, 725
HphI GGTGA 2 cut(s) 379, 455
Hpy166II GTNNAC 2 cut(s) 378, 782
Hpy188I TCNGA 4 cut(s) 247, 315, 630, 639
Hpy188III TCNNGA 5 cut(s) 70, 287, 305, 515, 706
Hpy8I GTNNAC 2 cut(s) 378, 782
Hpy99I CGWCG 3 cut(s) 110, 260, 263
HpyAV CCTTC 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 6 cut(s) 213, 549, 605, 653, 665, 761
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 200, 226, 333, 542, 758
HpyF3I CTNAG 6 cut(s) 221, 246, 288, 395, 467, 504
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 49, 94
HspAI GCGC 2 cut(s) 18, 88
KasI GGCGCC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 109, 511, 592
LmnI GCTCC 2 cut(s) 454, 708
Lsp1109I GCAGC 3 cut(s) 436, 529, 745
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 111, 513, 594
MboI GATC 3 cut(s) 109, 511, 592
MboII GAAGA 1 cut(s) 400
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 33, 451, 479
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 5 cut(s) 343, 417, 606, 640, 762
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 2 cut(s) 137, 317
MnlI CCTC 6 cut(s) 161, 200, 241, 343, 354, 487
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MseI TTAA 2 cut(s) 675, 747
Msp20I TGGCCA 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 746
MspR9I CCNGG 2 cut(s) 34, 139
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 2 cut(s) 34, 139
MwoI GCNNNNNNNGC 6 cut(s) 122, 200, 226, 333, 542, 758
NarI GGCGCC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 109, 511, 592
NlaIII CATG 2 cut(s) 49, 94
NlaIV GGNNCC 3 cut(s) 19, 31, 181
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 33
PceI AGGCCT 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 242, 725
PkrI GCNGC 3 cut(s) 426, 544, 760
PleI GAGTC 2 cut(s) 136, 316
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 2 cut(s) 136, 316
Ppu21I YACGTR 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 32, 137
PspGI CCWGG 2 cut(s) 32, 137
PspN4I GGNNCC 3 cut(s) 19, 31, 181
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 5 cut(s) 7, 29, 30, 148, 180
PstNI CAGNNNCTG 1 cut(s) 758
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 675, 747
SatI GCNGC 3 cut(s) 425, 543, 759
Sau3AI GATC 3 cut(s) 109, 511, 592
Sau96I GGNCC 5 cut(s) 7, 29, 30, 148, 180
SchI GAGTC 2 cut(s) 137, 317
ScrFI CCNGG 2 cut(s) 34, 139
SduI GDGCHC 3 cut(s) 33, 451, 479
SfoI GGCGCC 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 3 cut(s) 68, 83, 746
SmoI CTYRAG 3 cut(s) 68, 83, 746
Sse9I AATT 5 cut(s) 343, 417, 606, 640, 762
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 3 cut(s) 42, 406, 433
SspDI GGCGCC 1 cut(s) 17
SstI GAGCTC 1 cut(s) 451
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 32, 137
StyI CCWWGG 3 cut(s) 45, 51, 62
TaiI ACGT 1 cut(s) 342
TaqI TCGA 4 cut(s) 69, 255, 348, 723
TasI AATT 5 cut(s) 343, 417, 606, 640, 762
TfiI GAWTC 2 cut(s) 242, 725
Tru1I TTAA 2 cut(s) 675, 747
Tru9I TTAA 2 cut(s) 675, 747
TscAI CASTG 3 cut(s) 190, 667, 759
TseI GCWGC 3 cut(s) 424, 542, 758
TspDTI ATGAA 2 cut(s) 477, 753
TspGWI ACGGA 2 cut(s) 85, 116
TspRI CASTG 3 cut(s) 190, 667, 759
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 2 cut(s) 343, 640
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.