Rh5BG142400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0032378
Physical Location & Seq
Reverse (-)
14777582 .. 14778559
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG142400.1

Sequence Viewer

Length: 417 bp
ATGGAAGTTAACACTACTGTTGCGGAAAACCATACTGATCATAAACACCACCTTTCACATTCCTATAGCCACCACCACCATGGAAGTTTTCCTTCCAAGTTGGCTATCATTATCATCATTTCCATCGTCTTTGTCATGGTCGTTCTTGCTATAACCCTCATCATATTATTTCTCAGACGGCTCAAGTCAGCCAAAACTAGTGGTGGTGACATTGACGATGAGAAGGGCAGCTTGAACAATACAAGCTGCAGGTTCATTGCTCAAAACTCCATGAACTTCAACTCCAGCCCAGATGTGAAGGGTGGGTGCCTTCAAGGAGGGAACTTGGGAAGGTCAATGAGGACATCAGTGGCAATAATGGTGTTCTTCTTCTCAGCAACAACCCCATTTGGAATTGCACTGGGAATGCCCATTTAA

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

9.14

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0032378)

Species Orthologous Gene IDs
rosa_rugosa Rorug05G0052800
rosa_samantha Rh5BG142400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 306
AciI CCGC 1 cut(s) 23
AgsI TTSAA 3 cut(s) 235, 280, 314
AhlI ACTAGT 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 2 cut(s) 231, 246
AluI AGCT 2 cut(s) 231, 246
ApeKI GCWGC 2 cut(s) 228, 246
AsuHPI GGTGA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 233, 240
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 194
BclI TGATCA 1 cut(s) 37
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 64, 247
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 2 cut(s) 229, 247
BlsI GCNGC 2 cut(s) 230, 248
BmiI GGNNCC 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 187, 387
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 233, 240
BshNI GGYRCC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 411
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 186, 386
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 173, 373
BstDSI CCRYGG 1 cut(s) 79
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstSFI CTRYAG 2 cut(s) 64, 247
BstV1I GCAGC 2 cut(s) 233, 240
BstXI CCANNNNNNTGG 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 354, 398
BveI ACCTGC 1 cut(s) 240
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 80, 136, 271
CviJI RGCY 7 cut(s) 69, 104, 181, 191, 231, 246, 288
CviKI_1 RGCY 7 cut(s) 69, 104, 181, 191, 231, 246, 288
DdeI CTNAG 2 cut(s) 173, 373
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 83, 139, 274
FaiI YATR 8 cut(s) 33, 42, 66, 81, 137, 152, 164, 272
FalI AAGNNNNNCTT 4 cut(s) 76, 108, 215, 247
FatI CATG 3 cut(s) 79, 135, 270
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 229, 247
Fsp4HI GCNGC 2 cut(s) 229, 247
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 229, 247
GsuI CTGGAG 1 cut(s) 268
Hin1II CATG 3 cut(s) 83, 139, 274
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HpaI GTTAAC 1 cut(s) 10
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 102, 217, 292, 320, 324
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 249, 398
HpyF3I CTNAG 2 cut(s) 173, 373
Hsp92II CATG 3 cut(s) 83, 139, 274
Ksp22I TGATCA 1 cut(s) 37
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 235, 298, 303, 386
Lsp1109I GCAGC 2 cut(s) 233, 240
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 358, 361
MluCI AATT 1 cut(s) 393
MnlI CCTC 3 cut(s) 167, 311, 333
MseI TTAA 2 cut(s) 9, 415
MslI CAYNNNNRTG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 411
NcoI CCATGG 1 cut(s) 79
NdeII GATC 1 cut(s) 37
NlaIII CATG 3 cut(s) 83, 139, 274
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 206
PctI GAATGC 1 cut(s) 411
PkrI GCNGC 2 cut(s) 230, 248
PspN4I GGNNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 9, 415
SatI GCNGC 2 cut(s) 229, 247
Sau3AI GATC 1 cut(s) 37
SetI ASST 5 cut(s) 54, 233, 248, 254, 335
SfcI CTRYAG 2 cut(s) 64, 247
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 1 cut(s) 393
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 19
TasI AATT 1 cut(s) 393
Tru1I TTAA 2 cut(s) 9, 415
Tru9I TTAA 2 cut(s) 9, 415
TscAI CASTG 2 cut(s) 354, 405
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 228, 246
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 244, 287
TspRI CASTG 2 cut(s) 354, 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.