Rh5BG237900

Peptidyl-prolyl cis-trans isomerase CYP37

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
28366992 .. 28370051
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG237900.1

Sequence Viewer

Length: 459 bp
ATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGAAGCTGCTCTTGATTTGGTAGCTGTGATAGTCGTGATTCATGCTAAAGAGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACTGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATTAAGCCATCTGGGCAATTTGAGCCCTTGTATTTAACAAAATTAGATGTCCAGGGCGGGGAATTGCCATTAATTTTCTTCTATCTTTACGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGATGGAGAATTCTCAGTTTTTGGATACACAACAGTTGGGAAATATGTTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGCTGGTCGAAGGTCAAGATCGTCTAGTGTTGCCAAATGAGAAGTGA

Protein Analysis

152

Amino Acids

16.52

Weight (kDa)

5.15

Isoelectric Point (pI)

26.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022474)

Species Orthologous Gene IDs
prunus_persica Prupe.4G187400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033671
rosa_laevigata RLG00000033498
rosa_samantha Rh5BG237900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 253
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 6 cut(s) 44, 62, 121, 126, 140, 415
AluI AGCT 6 cut(s) 44, 62, 121, 126, 140, 415
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 332
AseI ATTAAT 1 cut(s) 266
BanII GRGCYC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 92, 211, 320
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 341
BfaI CTAG 2 cut(s) 180, 437
BfuI GTATCC 1 cut(s) 341
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 1 cut(s) 45
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 3 cut(s) 136, 162, 351
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 404, 430
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 1 cut(s) 252
BspCNI CTCAG 3 cut(s) 135, 161, 350
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 404, 430
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 173, 358
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 122, 148, 337
BstKTI GATC 2 cut(s) 407, 433
BstMBI GATC 2 cut(s) 404, 430
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 1 cut(s) 80
DdeI CTNAG 3 cut(s) 122, 148, 337
DpnI GATC 2 cut(s) 406, 432
DpnII GATC 2 cut(s) 404, 430
Eco24I GRGCYC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 106, 369
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 180, 437
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 411
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 76, 400
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 50, 73, 161, 428
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 173, 358
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 3 cut(s) 122, 148, 337
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 404, 430
LpnPI CCDG 7 cut(s) 22, 192, 233, 260, 285, 375, 401
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 2 cut(s) 180, 437
MalI GATC 2 cut(s) 406, 432
MboI GATC 2 cut(s) 404, 430
MboII GAAGA 2 cut(s) 13, 265
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 6 cut(s) 195, 212, 236, 257, 267, 332
MnlI CCTC 2 cut(s) 82, 302
MseI TTAA 3 cut(s) 198, 230, 266
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 2 cut(s) 404, 430
NlaIII CATG 1 cut(s) 83
PfeI GAWTC 2 cut(s) 76, 400
PkrI GCNGC 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 198, 230, 266
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 404, 430
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 222
SetI ASST 8 cut(s) 46, 64, 93, 123, 128, 142, 417, 427
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 6 cut(s) 195, 212, 236, 257, 267, 332
SsiI CCGC 1 cut(s) 252
SspMI CTAG 2 cut(s) 180, 437
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 173, 358
TaqI TCGA 3 cut(s) 128, 403, 420
TasI AATT 6 cut(s) 195, 212, 236, 257, 267, 332
TfiI GAWTC 2 cut(s) 76, 400
Tru1I TTAA 3 cut(s) 198, 230, 266
Tru9I TTAA 3 cut(s) 198, 230, 266
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 178
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 1 cut(s) 332
XspI CTAG 2 cut(s) 180, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.