Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

11153240 .. 11158321

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G187400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCATTCCCTTTATCCTCCGCCATCATCTCTCACAGGCTCTCCTTCAATGTCTCCATTGCTCCCTCTACCCCAAGGTCAAATCTCAAACCAATCCATTTCATATTTTGCTTCAATGGGAAAGACCCAGAAAGATCAGGCCGCTCCAGAGTTCATTGCCTGCCCAAAAATAATCATCTAAAGGAACTCAAAGACCAGCAGCATGGTACTCTTACCAATTCCTACATATCAACTCGTGGACATACAAACAAACTTCAAAGTCTAATTGCTGTGATCCTTGTGTTTGTCCAAATATCTTCTCCACTTCCTTTGGTTGGTTGGGACGTTTTGCCTATATCACCTGCAAATGCAGTTCTTTATTCTCCAGACACCAAGGTTCCCAGATCAGGAGAACTAGCTTTAAGGAGGGCAATCCCTGCAAACACAAACATGAAGACCATACAGGATTCTCTGGAGGAGATTTTGTATTTGCTAAGAATTCCACAGAGAAAGCCTTATGGAACCATGGAGGGAAATGTGAAGAAAGCTTTAAAGATAGCAACAGATGAAAAGGATTCAATTCTGGCAAGCATACCAACAGACTTGAGGGAGAAGGGCTCCACATTATATGCATCTCTAATCGATGGAAAGAATGGATTGCAAGCTCTTCTTGCATGTATAAAGGATAAGGACCCAGATAAAGTATCAGTAGGCCTCGCATCTTCACTGGATACCATTGCTGAGCTGGAGTTGTTACAGGCTCCAGGCTTGTCATTTTTGTTACCCGAGCAATACCAGAGATACCCAAGGCTTACAGGGAGAGGAATTGTTGAATTGACCATAGAGAAAGGTGATGGTTCAACATTTTCTCCTGAAGCCGGTGGTGAACCAAGAAAGACTGCCAAAATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACAGCAGGGAATTTCGCAAAACTGATAATTGATGAGGCATACAATGGGGCAAAGCTCCGCTCTACCGACCAAGCTGTTCTTTCAGACAACGGTCTTGACAAGAACAATGGTTATAGTGTTCCTCTAGAGATAAAGCCATCTGGGCAATTTGAGCCCTTATACAGAACAAAATTAGATGTGCAGGATGGGGAATTGCCAACTCTTCCACTATCTGTTTATGGAGCTGTTGCTATGGCGCATAGTGAAGTCAATGAGGAGTACTCATCACCGTATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGGTTATCTTTTGATGAAGGAGAATTCTCAGTTTTTGGATATGCAACTGCTGGGAGAGATATTCTCTCACAGATAAAAACAGGAGATGTGATTCAATCTGCAAAGCTGATCGACGGTCAAGATCGTCTTGTATTGCCAGATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

463

Amino Acids

50.55

Weight (kDa)

6.42

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	349
AccBSI	CCGCTC	2 cut(s)	144, 981
AciI	CCGC	3 cut(s)	21, 142, 979
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	4 cut(s)	477, 885, 931, 1262
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	2 cut(s)	208, 1181
AfiI	CCNNNNNNNGG	3 cut(s)	314, 386, 857
AgsI	TTSAA	7 cut(s)	49, 115, 257, 558, 812, 840, 1334
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	8 cut(s)	398, 527, 644, 724, 976, 995, 1145, 1345
AluI	AGCT	8 cut(s)	398, 527, 644, 724, 976, 995, 1145, 1345
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	2 cut(s)	139, 691
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	4 cut(s)	477, 885, 931, 1262
AspLEI	GCGC	1 cut(s)	1159
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	4 cut(s)	330, 842, 875, 1179
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	670
BanII	GRGCYC	2 cut(s)	599, 1077
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	6 cut(s)	32, 617, 827, 896, 1066, 1100
BciT130I	CCWGG	1 cut(s)	744
BciVI	GTATCC	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	395, 1046
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	1063
BisI	GCNGC	2 cut(s)	142, 200
BlpI	GCTNAGC	1 cut(s)	720
BlsI	GCNGC	2 cut(s)	143, 201
BmcAI	AGTACT	1 cut(s)	1181
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	2 cut(s)	620, 707
BoxI	GACNNNNGTC	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	6 cut(s)	581, 613, 1166, 1198, 1287, 1319
BpmI	CTGGAG	5 cut(s)	130, 348, 473, 726, 746
Bpu1102I	GCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	604
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	4 cut(s)	74, 372, 504, 785
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 449, 479, 832, 862
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 386, 857
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	1 cut(s)	711
Bse3DI	GCAATG	3 cut(s)	57, 154, 714
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	74, 372, 504, 785
BseGI	GGATG	1 cut(s)	1111
BseLI	CCNNNNNNNGG	3 cut(s)	314, 386, 857
BseMI	GCAATG	3 cut(s)	57, 154, 714
BseMII	CTCAG	2 cut(s)	711, 1281
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	2 cut(s)	470, 1190
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	1289
BsgI	GTGCAG	1 cut(s)	1121
BshFI	GGCC	2 cut(s)	141, 693
BshVI	ATCGAT	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	314, 386, 857
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	141, 693
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	599, 1077
Bsp143I	GATC	5 cut(s)	134, 273, 383, 1347, 1360
Bsp1720I	GCTNAGC	1 cut(s)	720
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	3 cut(s)	21, 142, 979
BspANI	GGCC	2 cut(s)	141, 693
BspCNI	CTCAG	2 cut(s)	712, 1280
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	651
BsrBI	CCGCTC	2 cut(s)	144, 981
BsrDI	GCAATG	3 cut(s)	57, 154, 714
BsrFI	RCCGGY	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	4 cut(s)	74, 372, 504, 785
BssMI	GATC	5 cut(s)	134, 273, 383, 1347, 1360
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	4 cut(s)	74, 372, 504, 785
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	1013, 1191, 1355
Bst6I	CTCTTC	2 cut(s)	651, 1128
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	161, 568, 642, 1231
BstDEI	CTNAG	3 cut(s)	473, 720, 1267
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	1111
BstHHI	GCGC	1 cut(s)	1159
BstKTI	GATC	5 cut(s)	137, 276, 386, 1350, 1363
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	5 cut(s)	134, 273, 383, 1347, 1360
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 650, 1063, 1072
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	657
BstPAI	GACNNNNGTC	1 cut(s)	1011
BstSCI	CCNGG	1 cut(s)	742
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	141, 693
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	1111
BtsIMutI	CAGTG	1 cut(s)	704
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	161, 568, 642, 1231
CfoI	GCGC	1 cut(s)	1159
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	1 cut(s)	670
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	207, 1180
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	4 cut(s)	203, 430, 505, 654
CviQI	GTAC	2 cut(s)	207, 1180
DdeI	CTNAG	3 cut(s)	473, 720, 1267
DpnI	GATC	5 cut(s)	136, 275, 385, 1349, 1362
DpnII	GATC	5 cut(s)	134, 273, 383, 1347, 1360
DraI	TTTAAA	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	651, 1128
EarI	CTCTTC	2 cut(s)	651, 1128
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	4 cut(s)	74, 372, 504, 785
Eco147I	AGGCCT	1 cut(s)	693
Eco24I	GRGCYC	2 cut(s)	599, 1077
Eco47I	GGWCC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRI	GAATTC	2 cut(s)	477, 1262
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	4 cut(s)	74, 372, 504, 785
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	599, 1077
ErhI	CCWWGG	4 cut(s)	74, 372, 504, 785
FaeI	CATG	4 cut(s)	206, 433, 508, 657
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 984, 1016, 1350, 1382
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	202, 429, 504, 653
Fnu4HI	GCNGC	2 cut(s)	142, 200
FokI	GGATG	1 cut(s)	1118
FriOI	GRGCYC	2 cut(s)	599, 1077
Fsp4HI	GCNGC	2 cut(s)	142, 200
FspBI	CTAG	2 cut(s)	395, 1046
GlaI	GCGC	1 cut(s)	1158
GluI	GCNGC	2 cut(s)	142, 200
GsaI	CCCAGC	1 cut(s)	1293
GsuI	CTGGAG	5 cut(s)	130, 348, 473, 726, 746
HaeIII	GGCC	2 cut(s)	141, 693
HapII	CCGG	1 cut(s)	858
HhaI	GCGC	1 cut(s)	1159
Hin1II	CATG	4 cut(s)	206, 433, 508, 657
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	3 cut(s)	446, 554, 1330
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	4 cut(s)	330, 842, 875, 1179
Hpy166II	GTNNAC	2 cut(s)	239, 866
Hpy188I	TCNGA	1 cut(s)	1006
Hpy188III	TCNNGA	8 cut(s)	147, 365, 387, 452, 851, 1016, 1046, 1358
Hpy8I	GTNNAC	2 cut(s)	239, 866
Hpy99I	CGWCG	1 cut(s)	1355
HpyAV	CCTTC	3 cut(s)	55, 586, 1250
HpyCH4III	ACNGT	3 cut(s)	1013, 1191, 1355
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	9 cut(s)	344, 350, 419, 611, 640, 653, 1102, 1283, 1340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 650, 1063, 1072
HpyF3I	CTNAG	3 cut(s)	473, 720, 1267
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	206, 433, 508, 657
HspAI	GCGC	1 cut(s)	1157
Kzo9I	GATC	5 cut(s)	134, 273, 383, 1347, 1360
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	6 cut(s)	67, 149, 602, 745, 981, 1142
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	620, 707
MaeI	CTAG	2 cut(s)	395, 1046
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	732, 759
MalI	GATC	5 cut(s)	136, 275, 385, 1349, 1362
MbiI	CCGCTC	2 cut(s)	144, 981
MboI	GATC	5 cut(s)	134, 273, 383, 1347, 1360
MboII	GAAGA	7 cut(s)	288, 445, 532, 638, 693, 1115, 1195
MhlI	GDGCHC	2 cut(s)	599, 1077
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	3 cut(s)	401, 530, 920
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	416, 650, 1063, 1072
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	5 cut(s)	134, 273, 383, 1347, 1360
NlaIII	CATG	4 cut(s)	206, 433, 508, 657
NlaIV	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	657
PaqCI	CACCTGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	446, 554, 1330
PkrI	GCNGC	2 cut(s)	143, 201
PpuMI	RGGWCCY	1 cut(s)	670
PshAI	GACNNNNGTC	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	1289
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
PspPI	GGNCC	1 cut(s)	670
PspPPI	RGGWCCY	1 cut(s)	670
RsaI	GTAC	2 cut(s)	208, 1181
RsaNI	GTAC	2 cut(s)	207, 1180
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	401, 530, 920
SatI	GCNGC	2 cut(s)	142, 200
Sau3AI	GATC	5 cut(s)	134, 273, 383, 1347, 1360
Sau96I	GGNCC	1 cut(s)	670
ScaI	AGTACT	1 cut(s)	1181
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	2 cut(s)	599, 1077
SfaNI	GCATC	2 cut(s)	620, 707
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	3 cut(s)	21, 142, 979
SspMI	CTAG	2 cut(s)	395, 1046
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	4 cut(s)	74, 372, 504, 785
TaaI	ACNGT	3 cut(s)	1013, 1191, 1355
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	621, 1350
TatI	WGTACW	1 cut(s)	1179
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	446, 554, 1330
Tru1I	TTAA	3 cut(s)	401, 530, 920
Tru9I	TTAA	3 cut(s)	401, 530, 920
TscAI	CASTG	1 cut(s)	711
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	5 cut(s)	91, 143, 446, 561, 1269
TspRI	CASTG	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	670
XapI	RAATTY	4 cut(s)	477, 885, 931, 1262
XbaI	TCTAGA	1 cut(s)	1045
XceI	RCATGY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XspI	CTAG	2 cut(s)	395, 1046
ZrmI	AGTACT	1 cut(s)	1181
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.