Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001580.1

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

132781 .. 136762

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001580.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcattccctttatcctccgccaccatctctcacaacctctccttcaatgcctccactcgcaggcttagtttcagaccagcccatttcatattctgcttcaacaggatcgacccacaaaaaatgggccgctccagagtccattgcatctccagcaagaatctatcagagaatggattgcaagttcttcttggatatataaaggataaggatgcagataaagtatctgtggcccttgcatcttcactggataccattgctgagcttgagttattacaggctccaggcctgtcattcttgttacctgagccataccagagatacccaaggcttacagggagaggaactgttgaattaaccattgagaaaggtgacggttcaacattttctccagaagctggtggtgaaccaagaaagacagccagtattcaggttgttatagatggatattcagcaccattaacagcgggtaatttcgcaaaactggtaagtgatggggcatacaatggggcaaagctcagctcgaccgaccaagctattctctcagatagtggtattgacaagaacagtggttctagtgttcctttagaaatcaagccatctgggcaatttgagcccttgtatagaacaaaattagatgtccaggacggggaattgccagttcttccgctatctgtttatggatcagttgcaatggcacatagtgaagcctctgacgagtactcctcaccatatcagtttttcttctatctttatgataaaagaaatgctggcttgggaggattatcatttgatgaaggagaattttcagtttttggatacacaacagttgggaaagatattctttcacagataaaaactggagatgtgattcgatctgcaaagttggtcgaaggtcaagatcgtctagtgctgccaaatgagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

309

Amino Acids

33.5

Weight (kDa)

5.5

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	4 cut(s)	21, 130, 467, 668
AclWI	GGATC	2 cut(s)	116, 691
AcsI	RAATTY	1 cut(s)	803
AdeI	CACNNNGTG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	3 cut(s)	63, 398, 649
AgsI	TTSAA	4 cut(s)	49, 103, 353, 381
AjnI	CCWGG	2 cut(s)	283, 642
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	5 cut(s)	265, 398, 517, 522, 536
AluI	AGCT	5 cut(s)	265, 398, 517, 522, 536
AlwI	GGATC	2 cut(s)	116, 691
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	127, 231, 286
ApeKI	GCWGC	1 cut(s)	913
ApoI	RAATTY	1 cut(s)	803
AspS9I	GGNCC	2 cut(s)	127, 232
AsuHPI	GGTGA	3 cut(s)	383, 416, 720
BanII	GRGCYC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	900
BccI	CCATC	4 cut(s)	35, 437, 488, 607
BciT130I	CCWGG	2 cut(s)	285, 644
BciVI	GTATCC	2 cut(s)	244, 812
BfaI	CTAG	2 cut(s)	576, 908
BfuI	GTATCC	2 cut(s)	244, 812
BglI	GCCNNNNNGGC	1 cut(s)	604
BisI	GCNGC	2 cut(s)	130, 914
BlpI	GCTNAGC	2 cut(s)	261, 518
BlsI	GCNGC	2 cut(s)	131, 915
BmcAI	AGTACT	1 cut(s)	722
Bme1390I	CCNGG	2 cut(s)	285, 644
BmgT120I	GGNCC	2 cut(s)	127, 232
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	285, 644
BmsI	GCATC	3 cut(s)	156, 202, 248
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	5 cut(s)	118, 136, 267, 375, 882
Bpu10I	CCTNAGC	1 cut(s)	306
Bpu1102I	GCTNAGC	2 cut(s)	261, 518
BpuEI	CTTGAG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 373, 403, 707, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 398, 649
Bse1I	ACTGG	5 cut(s)	252, 423, 489, 659, 865
Bse3DI	GCAATG	3 cut(s)	142, 255, 699
BseBI	CCWGG	2 cut(s)	285, 644
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	63, 398, 649
BseMI	GCAATG	3 cut(s)	142, 255, 699
BseMII	CTCAG	4 cut(s)	252, 297, 532, 558
BseNI	ACTGG	5 cut(s)	252, 423, 489, 659, 865
BseRI	GAGGAG	1 cut(s)	715
BseXI	GCAGC	1 cut(s)	900
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	129, 233, 288
BsiEI	CGRYCG	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	63, 398, 649
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	129, 233, 288
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	108, 683, 875, 901
Bsp1720I	GCTNAGC	2 cut(s)	261, 518
BspACI	CCGC	4 cut(s)	21, 130, 467, 668
BspANI	GGCC	3 cut(s)	129, 233, 288
BspCNI	CTCAG	4 cut(s)	253, 298, 531, 557
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	116, 691
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	3 cut(s)	142, 255, 699
BsrI	ACTGG	5 cut(s)	252, 423, 489, 659, 865
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	4 cut(s)	108, 683, 875, 901
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	285, 644
Bst4CI	ACNGT	4 cut(s)	349, 377, 569, 829
BstC8I	GCNNGC	2 cut(s)	65, 772
BstDEI	CTNAG	5 cut(s)	68, 261, 306, 518, 544
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	111, 686, 878, 904
BstMBI	GATC	4 cut(s)	108, 683, 875, 901
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 604, 613
BstNI	CCWGG	2 cut(s)	285, 644
BstSCI	CCNGG	2 cut(s)	283, 642
BstV1I	GCAGC	1 cut(s)	900
BsuI	GTATCC	2 cut(s)	244, 812
BsuRI	GGCC	3 cut(s)	129, 233, 288
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	245, 574
Cac8I	GCNNGC	2 cut(s)	65, 772
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	127, 232
Csp6I	GTAC	1 cut(s)	721
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	5 cut(s)	68, 261, 306, 518, 544
DpnI	GATC	4 cut(s)	110, 685, 877, 903
DpnII	GATC	4 cut(s)	108, 683, 875, 901
DraIII	CACNNNGTG	1 cut(s)	704
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	618
EcoRII	CCWGG	2 cut(s)	283, 642
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	326
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 828, 860
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	130, 914
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	2 cut(s)	130, 914
FspBI	CTAG	2 cut(s)	576, 908
GluI	GCNGC	2 cut(s)	130, 914
GsuI	CTGGAG	5 cut(s)	118, 136, 267, 375, 882
HaeIII	GGCC	3 cut(s)	129, 233, 288
HinfI	GANTC	3 cut(s)	138, 160, 871
HphI	GGTGA	3 cut(s)	383, 416, 720
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	77, 169, 547, 715
Hpy188III	TCNNGA	3 cut(s)	135, 392, 899
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	3 cut(s)	55, 791, 887
HpyCH4III	ACNGT	4 cut(s)	349, 377, 569, 829
HpyCH4V	TGCA	6 cut(s)	147, 181, 215, 239, 692, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 604, 613
HpyF3I	CTNAG	5 cut(s)	68, 261, 306, 518, 544
Kzo9I	GATC	4 cut(s)	108, 683, 875, 901
LmnI	GCTCC	2 cut(s)	137, 286
Lsp1109I	GCAGC	1 cut(s)	900
LweI	GCATC	3 cut(s)	156, 202, 248
MaeI	CTAG	2 cut(s)	576, 908
MaeIII	GTNAC	2 cut(s)	300, 371
MalI	GATC	4 cut(s)	110, 685, 877, 903
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	108, 683, 875, 901
MboII	GAAGA	4 cut(s)	179, 234, 656, 736
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	6 cut(s)	353, 472, 608, 632, 653, 803
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	28, 50, 64, 335, 721, 736, 773
MseI	TTAA	2 cut(s)	356, 461
MspA1I	CMGCKG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	285, 644
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	285, 644
MwoI	GCNNNNNNNGC	3 cut(s)	153, 604, 613
NdeII	GATC	4 cut(s)	108, 683, 875, 901
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	288
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	160, 871
PflMI	CCANNNNNTGG	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	2 cut(s)	131, 915
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	283, 642
PspGI	CCWGG	2 cut(s)	283, 642
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	127, 232
PstNI	CAGNNNCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	356, 461
SatI	GCNGC	2 cut(s)	130, 914
Sau3AI	GATC	4 cut(s)	108, 683, 875, 901
Sau96I	GGNCC	2 cut(s)	127, 232
ScaI	AGTACT	1 cut(s)	722
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	285, 644
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	3 cut(s)	156, 202, 248
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	353, 472, 608, 632, 653, 803
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	21, 130, 467, 668
SspMI	CTAG	2 cut(s)	576, 908
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	283, 642
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	4 cut(s)	349, 377, 569, 829
TaqI	TCGA	4 cut(s)	111, 524, 874, 891
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	6 cut(s)	353, 472, 608, 632, 653, 803
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	160, 871
Tru1I	TTAA	2 cut(s)	356, 461
Tru9I	TTAA	2 cut(s)	356, 461
TscAI	CASTG	2 cut(s)	252, 574
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	79, 810
TspRI	CASTG	2 cut(s)	252, 574
Van91I	CCANNNNNTGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	803
XspI	CTAG	2 cut(s)	576, 908
ZrmI	AGTACT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.