Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8461127.1

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

73 .. 1739

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8461127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcagggactcgaagaccaacgtagtactcttaccaattcctacatgtcaactaatggatgtaaaaagaaacttgagagtttaattgctgtgatccttgtggttgtccaaatatcctctccgcttcctttggttggttgggagttttggcctatatcacctgcgaacgcggttctttattctccagacactaaggttcccagaacaggagagctagctttaaggagggctatacctgcaaacacaaacatgaaggccatgcaggattctctggaggagatactatacttgctgagaatcccacagagaaagccttatggaaccatggaggggaatgtgaaaaaagctctaaagatagcaacagatcaaaaggactcaattttggcaagtgtacccacagacttgagggagaaggcttccaccttacatgcatctcttatcgatggaaagaatggattgcaagttcttcttggatatataaaggataaggatgcagataaagtatctgtggcccttgcatcttcactggataccattgctgagcttgagttattacaggctccaggcctgtcattcttgttacctgagccataccagagatacccaaggtcagtcttatctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

208

Amino Acids

22.88

Weight (kDa)

8.56

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
Acc36I	ACCTGC	2 cut(s)	169, 244
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	122, 170
AclWI	GGATC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	28, 393
AfiI	CCNNNNNNNGG	3 cut(s)	134, 206, 330
AflIII	ACRYGT	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	562
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	4 cut(s)	214, 218, 347, 544
AluI	AGCT	4 cut(s)	214, 218, 347, 544
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	4 cut(s)	149, 255, 510, 565
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	150
AsuNHI	GCTAGC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	2 cut(s)	169, 244
BfuI	GTATCC	1 cut(s)	523
BlpI	GCTNAGC	1 cut(s)	540
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	3 cut(s)	198, 322, 561
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	440, 481, 527
BmtI	GCTAGC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	3 cut(s)	168, 293, 546
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	3 cut(s)	95, 424, 566
Bsa29I	ATCGAT	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	324, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 206, 330
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	324, 605
BseGI	GGATG	2 cut(s)	65, 496
BseLI	CCNNNNNNNGG	3 cut(s)	134, 206, 330
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	284, 531, 576
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	151, 257, 512, 567
BshVI	ATCGAT	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	134, 206, 330
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	4 cut(s)	151, 257, 512, 567
Bsp143I	GATC	2 cut(s)	93, 364
Bsp1720I	GCTNAGC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	122, 170
BspANI	GGCC	4 cut(s)	151, 257, 512, 567
BspCNI	CTCAG	3 cut(s)	285, 532, 577
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	3 cut(s)	198, 322, 561
BspMI	ACCTGC	2 cut(s)	169, 244
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	324, 605
BssMI	GATC	2 cut(s)	93, 364
BssT1I	CCWWGG	2 cut(s)	324, 605
Bst2UI	CCWGG	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	5 cut(s)	192, 293, 540, 585, 621
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	65, 496
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	96, 367
BstMBI	GATC	2 cut(s)	93, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	2 cut(s)	49, 431
BstSCI	CCNGG	1 cut(s)	562
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	4 cut(s)	151, 257, 512, 567
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	65, 496
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	2 cut(s)	169, 244
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	27, 392
CviAII	CATG	5 cut(s)	46, 250, 259, 325, 428
CviQI	GTAC	2 cut(s)	27, 392
DdeI	CTNAG	5 cut(s)	192, 293, 540, 585, 621
DpnI	GATC	2 cut(s)	95, 366
DpnII	GATC	2 cut(s)	93, 364
Eco130I	CCWWGG	2 cut(s)	324, 605
Eco147I	AGGCCT	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	324, 605
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	324, 605
FaeI	CATG	5 cut(s)	49, 253, 262, 328, 431
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	45, 249, 258, 324, 427
FokI	GGATG	2 cut(s)	72, 503
FspBI	CTAG	1 cut(s)	215
GsuI	CTGGAG	3 cut(s)	168, 293, 546
HaeIII	GGCC	4 cut(s)	151, 257, 512, 567
Hin1II	CATG	5 cut(s)	49, 253, 262, 328, 431
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	9, 266, 297, 374
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	2 cut(s)	51, 392
Hpy188III	TCNNGA	2 cut(s)	185, 272
Hpy8I	GTNNAC	2 cut(s)	51, 392
HpyAV	CCTTC	2 cut(s)	247, 406
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	7 cut(s)	4, 239, 262, 431, 460, 494, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	5 cut(s)	192, 293, 540, 585, 621
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	49, 253, 262, 328, 431
Kzo9I	GATC	2 cut(s)	93, 364
LmnI	GCTCC	1 cut(s)	565
LweI	GCATC	3 cut(s)	440, 481, 527
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	2 cut(s)	95, 366
MboI	GATC	2 cut(s)	93, 364
MboII	GAAGA	3 cut(s)	26, 458, 513
MluCI	AATT	3 cut(s)	37, 84, 378
MlyI	GAGTC	2 cut(s)	3, 368
MnlI	CCTC	5 cut(s)	127, 219, 268, 322, 399
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	83, 221
MslI	CAYNNNNRTG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	93, 364
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	49, 253, 262, 328, 431
NlaIV	GGNNCC	3 cut(s)	198, 322, 561
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	49, 431
PaqCI	CACCTGC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	567
PciI	ACATGT	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	266, 297
PleI	GAGTC	2 cut(s)	3, 368
PpsI	GAGTC	2 cut(s)	3, 368
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	198, 322, 561
PspPI	GGNCC	1 cut(s)	511
RsaI	GTAC	2 cut(s)	28, 393
RsaNI	GTAC	2 cut(s)	27, 392
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	83, 221
Sau3AI	GATC	2 cut(s)	93, 364
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	2 cut(s)	3, 368
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	3 cut(s)	440, 481, 527
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	74, 403, 545
SmoI	CTYRAG	3 cut(s)	74, 403, 545
Sse9I	AATT	3 cut(s)	37, 84, 378
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	2 cut(s)	122, 170
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	324, 605
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	12, 441
TasI	AATT	3 cut(s)	37, 84, 378
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	266, 297
Tru1I	TTAA	2 cut(s)	83, 221
Tru9I	TTAA	2 cut(s)	83, 221
TscAI	CASTG	1 cut(s)	531
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	531
XceI	RCATGY	2 cut(s)	49, 431
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.